Test: BIOMD0000000086.xml - Ok


test: BIOMD0000000086.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000086.gif


Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4822989369.png


Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: species_10  species_11  species_14  species_15  species_12  species_13  species_9  species_16  species_7  species_8  species_5  species_6  species_3  species_4  species_2  species_1  species_0  parameter_0  parameter_1 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation species_10 species_11 species_14 species_15 species_12 species_13 species_9 species_16 species_7 species_8 species_5 species_6 species_3 species_4 species_2 species_1 species_0 parameter_0 parameter_1
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 Oscill8 Core0,00000E00,000,00000E00,00 - - - - - - - - 0,00000E00,000,00000E00,004,40000E-30,001,49000E-40,00 - - 0,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 VCell0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 copasi0,00000E00,000,00000E00,001,90444E-190,000,00000E00,00-2,04047E-190,00-1,76841E-190,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,001,03242E-190,00-2,19269E-200,00-8,13152E-200,00-8,13152E-200,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,002,19269E-200,000,00000E00,004,68000E-40,001,00000E-60,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.2 BioUML7,92337E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,99264E-90,006,51913E-120,000,00000E00,004,40000E-30,001,48998E-40,007,74108E-110,005,95825E-140,004,67992E-40,009,90077E-70,000,00000E00,001,23008E-160,000,00000E00,008,00078E-10,001,04010E-20,00
0.2 ByoDyn7,92337E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,99264E-90,006,51910E-120,000,00000E00,004,40000E-30,001,48998E-40,007,74108E-110,005,95826E-140,004,67992E-40,009,90077E-70,000,00000E00,001,33949E-160,000,00000E00,008,00078E-10,001,04010E-20,00
0.2 Jarnac7,92337E-90,007,00044E-210,001,08420E-190,00-1,21431E-170,00-8,47033E-220,001,99264E-90,006,51910E-120,001,21431E-170,004,40000E-30,001,48998E-40,007,74108E-110,005,95825E-140,004,67992E-40,009,90077E-70,001,84483E-280,001,33949E-160,001,33442E-190,00 - - - -
0.2 MathSBML7,89469E-90,360,00000E00,000,00000E00,000,00000E00,000,00000E00,002,01639E-90,006,60208E-121,30,00000E00,004,40000E-30,001,48998E-40,008,22617E-110,005,94446E-140,004,67992E-40,009,90082E-70,000,00000E00,001,69520E-150,000,00000E00,00 - - - -
0.2 Oscill8 Core8,65945E-99,21,62352E-13100 - - - - - - - - 5,35802E-120,00-5,05155E-101004,40000E-30,001,48998E-40,00 - - -6,47707E-131,09E34,67992E-40,009,90087E-70,00-1,47582E-141005,09836E-121037,01488E-11100 - - - -
0.2 SBToolbox27,92784E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,11295E-94,8-9,78151E-111,58E30,00000E00,004,40000E-30,001,49000E-40,002,50541E-102056,56448E-1410,24,67990E-40,009,90060E-70,000,00000E00,00-1,93571E-100,000,00000E00,008,17839E-12,21,06315E-22,2
0.2 SBWOdeSolver7,92337E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,99264E-90,006,51911E-120,000,00000E00,004,40000E-30,001,48998E-40,007,74107E-110,005,95826E-140,004,67992E-40,009,90077E-70,000,00000E00,001,33948E-160,000,00000E00,00 - - - -
0.2 VCell7,92337E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,99264E-90,006,51911E-120,000,00000E00,004,40000E-30,001,48998E-40,007,74108E-110,005,95837E-140,004,67992E-40,009,90077E-70,000,00000E00,001,33639E-160,000,00000E00,00 - - - -
0.2 copasi7,92357E-90,00-3,38495E-220,001,47304E-180,00-1,94275E-180,001,06234E-190,001,99243E-90,006,51849E-120,003,50204E-190,004,40000E-30,001,48998E-40,007,74159E-110,005,95871E-140,004,67992E-40,009,90077E-70,001,16353E-240,001,16010E-160,00-2,18403E-200,00 - - - -
0.2 edu.kgi.roadRunner7,92337E-90,003,77287E-200,00-4,97511E-190,007,02983E-170,00-5,13727E-170,001,99264E-90,006,51910E-120,00-1,75442E-170,004,40000E-30,001,48998E-40,007,74108E-110,005,95822E-140,004,67992E-40,009,90077E-70,00-5,86077E-230,001,33949E-160,00-6,46988E-190,00 - - - -
0.4 BioUML8,35241E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,56076E-90,005,12227E-120,000,00000E00,004,40000E-30,001,48998E-40,008,16544E-110,004,95754E-140,004,67992E-40,009,90082E-70,000,00000E00,009,73448E-170,000,00000E00,008,43407E-10,001,09643E-20,00
0.4 ByoDyn8,35241E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,56076E-90,005,12225E-120,000,00000E00,004,40000E-30,001,48998E-40,008,16544E-110,004,95754E-140,004,67992E-40,009,90082E-70,000,00000E00,001,05443E-160,000,00000E00,008,43407E-10,001,09643E-20,00
0.4 Jarnac8,35241E-90,00-5,29386E-200,002,16840E-190,00-2,34188E-170,00-1,96935E-200,001,56076E-90,005,12225E-120,002,16840E-170,004,40000E-30,001,48998E-40,008,16544E-110,004,95754E-140,004,67992E-40,009,90082E-70,001,10172E-250,001,05443E-160,001,22970E-180,00 - - - -
0.4 MathSBML8,30576E-90,00-2,60682E-310,00-6,62012E-300,00-1,92329E-280,00-2,79430E-310,001,60565E-90,405,26810E-122,8-1,82795E-270,004,40000E-30,001,48998E-40,008,32699E-110,005,06283E-140,004,67992E-40,009,90083E-70,00-6,65161E-360,00-2,97117E-170,00-1,26247E-270,00 - - - -
0.4 Oscill8 Core4,80413E-942,2-1,80257E-12100 - - - - - - - - -5,53675E-131112,87730E-91004,40000E-30,001,48999E-40,00 - - 2,63206E-115,12E44,67991E-40,009,90292E-70,006,61844E-14100-1,94085E-1263,52,35082E-11100 - - - -
0.4 SBToolbox28,31272E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,59917E-90,003,13521E-120,000,00000E00,004,40000E-30,001,49000E-40,008,61606E-113,55,13357E-140,004,67990E-40,009,90090E-70,000,00000E00,00-1,18713E-120,000,00000E00,008,39886E-10,421,09180E-20,42
0.4 SBWOdeSolver8,35241E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,56076E-90,005,12226E-120,000,00000E00,004,40000E-30,001,48998E-40,008,16544E-110,004,95754E-140,004,67992E-40,009,90082E-70,000,00000E00,001,05441E-160,000,00000E00,00 - - - -
0.4 VCell8,35241E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,56076E-90,005,12225E-120,000,00000E00,004,40000E-30,001,48998E-40,008,16544E-110,004,95766E-140,004,67992E-40,009,90082E-70,000,00000E00,001,05528E-160,000,00000E00,00 - - - -
0.4 copasi8,35376E-90,00-9,90145E-230,00-1,53672E-190,00-1,09496E-200,001,50053E-190,001,55941E-90,005,11787E-120,001,06376E-210,004,40000E-30,001,48998E-40,008,16677E-110,004,95441E-140,004,67992E-40,009,90082E-70,00-3,20384E-260,001,05309E-160,00-2,05509E-200,00 - - - -
0.4 edu.kgi.roadRunner8,35241E-90,00-2,14409E-200,00-7,22926E-190,00-3,72248E-170,003,93935E-170,001,56076E-90,005,12225E-120,00-2,99644E-180,004,40000E-30,001,48998E-40,008,16544E-110,004,95751E-140,004,67992E-40,009,90082E-70,00-3,38048E-230,001,05443E-160,001,89060E-180,00 - - - -
0.6 BioUML8,68292E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,22807E-90,004,04623E-120,000,00000E00,004,40000E-30,001,48999E-40,008,49235E-110,004,18665E-140,004,67991E-40,009,90085E-70,000,00000E00,007,01668E-170,000,00000E00,008,76785E-10,001,13982E-20,00
0.6 ByoDyn8,68292E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,22807E-90,004,04619E-120,000,00000E00,004,40000E-30,001,48999E-40,008,49235E-110,004,18665E-140,004,67991E-40,009,90085E-70,000,00000E00,008,34849E-170,000,00000E00,008,76785E-10,001,13982E-20,00
0.6 Jarnac8,68292E-90,00-1,25618E-200,000,00000E00,00-3,98986E-170,003,81165E-210,001,22807E-90,004,04619E-120,003,81639E-170,004,40000E-30,001,48999E-40,008,49235E-110,004,18665E-140,004,67991E-40,009,90085E-70,004,19658E-260,008,34848E-170,001,27214E-180,00 - - - -
0.6 MathSBML8,56785E-90,54-1,60862E-300,00-4,08516E-290,00-1,18683E-270,00-1,72431E-300,001,34059E-97,54,41119E-120,00-1,12800E-260,004,40000E-30,001,48999E-40,008,71123E-112,64,45133E-140,004,67991E-40,009,90087E-70,00-4,10459E-350,00-1,44183E-160,00-7,79047E-270,00 - - - -
0.6 Oscill8 Core8,61438E-90,00-5,41138E-14100 - - - - - - - - 4,12684E-120,005,13428E-111004,40000E-30,001,48999E-40,00 - - 2,49812E-134614,67991E-40,009,90095E-70,00-1,51602E-160,00-2,67462E-170,00-4,38889E-11100 - - - -
0.6 SBToolbox28,66653E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,24697E-90,009,16827E-121080,00000E00,004,40000E-30,001,49000E-40,007,43943E-1112,44,08715E-142,34,67990E-40,009,90080E-70,000,00000E00,002,93540E-121000,00000E00,008,74086E-10,311,13628E-20,31
0.6 SBWOdeSolver8,68292E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,22807E-90,004,04621E-120,000,00000E00,004,40000E-30,001,48999E-40,008,49234E-110,004,18666E-140,004,67991E-40,009,90085E-70,000,00000E00,008,34442E-170,000,00000E00,00 - - - -
0.6 VCell8,68292E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,22807E-90,004,04620E-120,000,00000E00,004,40000E-30,001,48999E-40,008,49235E-110,004,18659E-140,004,67991E-40,009,90085E-70,000,00000E00,008,38446E-170,000,00000E00,00 - - - -
0.6 copasi8,68382E-90,001,29865E-230,002,11272E-190,00-2,27230E-190,00-1,64799E-200,001,22716E-90,004,04327E-120,001,88200E-200,004,40000E-30,001,48999E-40,008,49322E-110,004,18427E-140,004,67991E-40,009,90085E-70,001,48613E-250,008,34322E-170,00-1,69226E-200,00 - - - -
0.6 edu.kgi.roadRunner8,68292E-90,00-9,23814E-200,006,28617E-200,002,55696E-170,00-4,75804E-170,001,22807E-90,004,04620E-120,001,43425E-170,004,40000E-30,001,48999E-40,008,49235E-110,004,18663E-140,004,67991E-40,009,90085E-70,001,36296E-230,008,34849E-170,008,22283E-180,00 - - - -
0.8 BioUML8,93753E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,009,71777E-100,003,21728E-120,000,00000E00,004,40000E-30,001,48999E-40,008,74417E-110,003,59280E-140,004,67991E-40,009,90087E-70,000,00000E00,006,19191E-170,000,00000E00,009,02497E-10,001,17325E-20,00
0.8 ByoDyn8,93753E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,009,71777E-100,003,21726E-120,000,00000E00,004,40000E-30,001,48999E-40,008,74417E-110,003,59280E-140,004,67991E-40,009,90087E-70,000,00000E00,006,65693E-170,000,00000E00,009,02497E-10,001,17325E-20,00
0.8 Jarnac8,93753E-90,00-9,66933E-210,004,81482E-330,001,73472E-180,00-3,59989E-210,009,71777E-100,003,21726E-120,00-3,46945E-180,004,40000E-30,001,48999E-40,008,74417E-110,003,59280E-140,004,67991E-40,009,90087E-70,00-3,95149E-270,006,65693E-170,001,48367E-180,00 - - - -
0.8 MathSBML8,72675E-91,7-3,71589E-300,00-9,43667E-290,00-2,74156E-270,00-3,98314E-300,001,18128E-921,53,89572E-120,00-2,60566E-260,004,40000E-30,001,48999E-40,008,80396E-110,684,08157E-1411,64,67991E-40,009,90088E-70,00-9,48156E-350,00-1,10466E-160,00-1,79959E-260,00 - - - -
0.8 Oscill8 Core8,87449E-90,004,09812E-15100 - - - - - - - - 3,30006E-120,003,41775E-111004,40000E-30,001,48999E-40,00 - - 3,65780E-140,004,67991E-40,009,90087E-70,001,18258E-190,006,82815E-170,00-3,78464E-11100 - - - -
0.8 SBToolbox28,95487E-90,190,00000E00,000,00000E00,000,00000E00,000,00000E00,009,58591E-101,41,14551E-111940,00000E00,004,40000E-30,001,49000E-40,007,02848E-1119,63,31049E-147,94,67990E-40,009,90080E-70,000,00000E00,004,77890E-121000,00000E00,009,02517E-10,001,17326E-20,00
0.8 SBWOdeSolver8,93752E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,009,71780E-100,003,21727E-120,000,00000E00,004,40000E-30,001,48999E-40,008,74417E-110,003,59281E-140,004,67991E-40,009,90087E-70,000,00000E00,006,65691E-170,000,00000E00,00 - - - -
0.8 VCell8,93753E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,009,71777E-100,003,21727E-120,000,00000E00,004,40000E-30,001,48999E-40,008,74417E-110,003,59287E-140,004,67991E-40,009,90087E-70,000,00000E00,006,59408E-170,000,00000E00,00 - - - -
0.8 copasi8,93727E-90,006,11788E-230,00-3,88477E-200,008,33336E-200,00-2,21872E-200,009,72032E-100,003,21809E-120,00-3,59645E-200,004,40000E-30,001,48999E-40,008,74392E-110,003,59339E-140,004,67991E-40,009,90087E-70,00-5,19274E-260,006,63516E-170,00-1,90324E-200,00 - - - -
0.8 edu.kgi.roadRunner8,93753E-90,00-5,57105E-200,00-5,61175E-190,00-8,28106E-170,006,48630E-170,009,71777E-100,003,21727E-120,009,99925E-180,004,40000E-30,001,48999E-40,008,74417E-110,003,59283E-140,004,67991E-40,009,90087E-70,003,87301E-230,006,65694E-170,008,60763E-180,00 - - - -
1.0 BioUML9,13366E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,74346E-100,002,57873E-120,000,00000E00,004,40000E-30,001,48999E-40,008,93816E-110,003,13534E-140,004,67991E-40,009,90089E-70,000,00000E00,004,54423E-170,000,00000E00,009,22304E-10,001,19900E-20,00
1.0 ByoDyn9,13366E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,74347E-100,002,57871E-120,000,00000E00,004,40000E-30,001,48999E-40,008,93816E-110,003,13534E-140,004,67991E-40,009,90089E-70,000,00000E00,005,35386E-170,000,00000E00,009,22304E-10,001,19900E-20,00
1.0 Jarnac