Test: BIOMD0000000087.xml - Ok

test: BIOMD0000000087.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000087.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL8679489165.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: G2Moff  Dun1A  G1Son  SCdkA  budscar  G1Soff  SCdkI  Mec1RPAssDNA  Dun1I  ExoXI  MCdkA  Exo1A  Rad17Utelo  ExoXA  MCdkI  Rad9Kin  ADP  SG2off  G2Mon  Exo1I  Cdc13  Utelo  Mcyclin  Rad9A  Ctelo  MG1off  M  SG2on  RPAssDNA1  RPAssDNA2  Scyclin  G2  S  Rad17  G1  Chk1I  G2cyclin  Chk1A  Rad53A  G1CdkI  RPAssDNA  MG1on  ssDNA  G1CdkA  ATP  G1cyclin  recovery  RPA  G2CdkA  Rad24  Rad9I  Rad53I  Mec1  kalive  G2CdkI 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation G2Moff Dun1A G1Son SCdkA budscar G1Soff SCdkI Mec1RPAssDNA Dun1I ExoXI MCdkA Exo1A Rad17Utelo ExoXA MCdkI Rad9Kin ADP SG2off G2Mon Exo1I Cdc13 Utelo Mcyclin Rad9A Ctelo MG1off M SG2on RPAssDNA1 RPAssDNA2 Scyclin G2 S Rad17 G1 Chk1I G2cyclin Chk1A Rad53A G1CdkI RPAssDNA MG1on ssDNA G1CdkA ATP G1cyclin recovery RPA G2CdkA Rad24 Rad9I Rad53I Mec1 kalive G2CdkI
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,003,00000E30,007,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,70000E20,003,00000E20,000,00000E00,000,00000E00,000,00000E00,006,40000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E40,000,00000E00,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,001,00000E00,001,00000E00,00
0.0 ByoDyn1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,003,00000E30,007,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,70000E20,003,00000E20,000,00000E00,000,00000E00,000,00000E00,006,40000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E40,000,00000E00,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,001,00000E00,001,00000E00,00
0.0 MathSBML1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,003,00000E30,007,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,70000E20,003,00000E20,000,00000E00,000,00000E00,000,00000E00,006,40000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E40,000,00000E00,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.0 Oscill8 Core1,00000E00,00 - - - - - - - - 1,00000E00,001,00000E00,00 - - 3,00000E30,007,00000E10,00 - - - - 0,00000E00,00 - - - - - - - - 1,00000E00,00 - - 6,70000E20,003,00000E20,00 - - 0,00000E00,00 - - - - 1,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - - - 1,00000E00,006,00000E10,000,00000E00,00 - - - - - - 0,00000E00,00 - - 0,00000E00,00 - - 1,00000E40,000,00000E00,00 - - - - - - - - 2,00000E10,006,90000E30,004,00000E30,00 - - - -
0.0 SBWOdeSolver1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,003,00000E30,007,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,70000E20,003,00000E20,000,00000E00,000,00000E00,000,00000E00,006,40000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E40,000,00000E00,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.0 copasi1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,003,00000E30,007,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,70000E20,003,00000E20,000,00000E00,000,00000E00,000,00000E00,006,40000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E40,000,00000E00,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.0 edu.kgi.roadRunner1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,003,00000E30,007,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,70000E20,003,00000E20,000,00000E00,000,00000E00,000,00000E00,006,40000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E40,000,00000E00,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.2 BioUML1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,001,05121E-230,003,00000E30,007,00000E10,000,00000E00,004,68027E00,002,39101E-80,001,06502E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,65320E20,003,00005E20,004,85459E-30,000,00000E00,000,00000E00,006,39951E10,001,00000E00,000,00000E00,000,00000E00,007,86969E-90,007,75672E-160,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,004,05524E-230,000,00000E00,003,78017E-80,000,00000E00,001,00000E40,003,19962E-20,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,001,00000E00,001,00000E00,00
0.2 ByoDyn0,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,001,04150E-230,003,00000E30,007,00000E10,000,00000E00,004,68028E00,002,34346E-80,001,04865E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,001,00000E01006,65320E20,003,00005E20,004,85460E-30,000,00000E00,000,00000E00,006,39951E10,001,00000E00,000,00000E00,000,00000E00,007,86384E-90,007,72999E-160,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,004,02412E-230,000,00000E00,003,77889E-80,000,00000E00,001,00000E40,003,19962E-20,001,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,001,00000E00,001,00000E00,00
0.2 MathSBML1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,002,10071E-220,003,00000E30,007,00000E10,000,00000E00,004,68028E00,002,34346E-80,001,04802E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,65320E20,003,00005E20,004,85460E-30,000,00000E00,000,00000E00,006,39951E10,001,00000E00,000,00000E00,000,00000E00,007,91449E-90,001,49173E-150,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,005,48758E-220,000,00000E00,003,77431E-80,120,00000E00,001,00000E40,003,19962E-20,001,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.2 Oscill8 Core1,00000E00,00 - - - - - - - - 1,00000E00,001,00000E00,00 - - 3,00000E30,007,00000E10,00 - - - - 2,39087E-80,00 - - - - - - - - 1,00000E00,00 - - 6,65320E20,003,00005E20,00 - - 0,00000E00,00 - - - - 1,00000E00,000,00000E00,00 - - 7,91610E-90,007,90399E-160,000,00000E00,000,00000E00,00 - - - - 1,00000E00,006,00000E10,000,00000E00,00 - - - - - - 4,19626E-230,00 - - 3,78313E-80,00 - - 1,00000E40,003,19962E-20,00 - - - - - - - - 2,00000E10,006,90000E30,004,00000E30,00 - - - -
0.2 SBWOdeSolver1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,001,04575E-230,003,00000E30,007,00000E10,000,00000E00,004,68028E00,002,39080E-80,001,06476E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,65320E20,003,00005E20,004,85460E-30,000,00000E00,000,00000E00,006,39951E10,001,00000E00,000,00000E00,000,00000E00,007,86597E-90,007,74058E-160,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,004,03745E-230,000,00000E00,003,77935E-80,000,00000E00,001,00000E40,003,19962E-20,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.2 copasi1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,004,54747E-130,003,00000E30,007,00000E10,000,00000E00,004,68028E00,002,39068E-80,001,06455E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,65320E20,003,00005E20,004,85460E-30,000,00000E00,000,00000E00,006,39951E10,001,00000E00,000,00000E00,000,00000E00,007,86419E-90,007,86276E-160,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,004,45853E-230,000,00000E00,003,77885E-80,000,00000E00,001,00000E40,003,19962E-20,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.2 edu.kgi.roadRunner1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,003,00000E30,007,00000E10,000,00000E00,004,68028E00,002,39068E-80,001,06458E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,65320E20,003,00005E20,004,85460E-30,000,00000E00,000,00000E00,006,39951E10,001,00000E00,000,00000E00,000,00000E00,007,86384E-90,007,72999E-160,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,004,02412E-230,000,00000E00,003,77889E-80,000,00000E00,001,00000E40,003,19962E-20,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.4 BioUML1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,004,66523E-200,003,00000E30,007,00000E10,000,00000E00,009,32786E00,009,46828E-80,008,05770E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,60672E20,003,00010E20,009,56531E-30,000,00000E00,000,00000E00,006,39904E10,001,00000E00,000,00000E00,000,00000E00,001,08440E-70,001,47047E-130,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,008,63294E-200,000,00000E00,002,51799E-70,000,00000E00,001,00000E40,006,39846E-20,000,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,001,00000E00,001,00000E00,00
0.4 ByoDyn0,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,004,65701E-200,003,00000E30,007,00000E10,000,00000E00,009,32786E00,009,09858E-80,007,81583E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,001,00000E01006,60672E20,003,00010E20,009,56532E-30,000,00000E00,000,00000E00,006,39904E10,001,00000E00,000,00000E00,000,00000E00,001,08425E-70,001,46950E-130,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,008,62054E-200,000,00000E00,002,51785E-70,000,00000E00,001,00000E40,006,39846E-20,001,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,001,00000E00,001,00000E00,00
0.4 MathSBML1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,001,14399E-190,003,00000E30,007,00000E10,000,00000E00,009,32786E00,009,09892E-80,007,79947E-90,211,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,60672E20,003,00010E20,009,56532E-30,000,00000E00,000,00000E00,006,39904E10,001,00000E00,000,00000E00,000,00000E00,001,08647E-70,131,91468E-130,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,002,15605E-190,000,00000E00,002,51387E-70,160,00000E00,001,00000E40,006,39846E-20,001,00000E00,004,00000E30,000,00000E00,007,00000E10,002,00000E10,006,90000E30,004,00000E30,00 - - 1,00000E00,00
0.4 Oscill8 Core1,00000E00,00 - - - - - - - - 1,00000E00,001,00000E00,00 - - 3,00000E30,007,00000E10,00 - - - - 9,46830E-80,00 - - - - - - - - 1,00000E00,00 - - 6,60672E20,003,00010E20,00 - - 0,00000E00,00 - - - - 1,00000E00,000,00000E00,00 - - 1,08509E-70,001,47252E-130,000,00000E00,000,00000E00,00 - - - - 1,00000E00,006,00000E10,000,00000E00,00 - - - - - - 8,65051E-200,00 - - 2,51814E-70,00 - - 1,00000E40,006,39846E-20,00 - - - - - - - - 2,00000E10,006,90000E30,004,00000E30,00 - - - -
0.4 SBWOdeSolver1,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,004,66468E-200,003,00000E30,007,00000E10,000,00000E00,009,32786E00,009,46824E-80,008,05761E-90,001,00000E00,000,00000E00,001,00000E30,001,00000E00,000,00000E00,006,60672E20,003,00010E20,009,56531E-30,000,00000E00,000,00000E00,006,39904E10,001,00000E00,000,00000E00,000,00000E00,001,08438E-70,001,47037E-130,000,00000E00,000,00000E00,000,00000E00,007,00000E10,001,00000E00,006,00000E10,000,00000E00,000,00000E00,000,00000E00,001,00000E00,008,63204E-200,000,00000E00,002,51797E-70,000,00000E00,001,00000E40,006,39846E-20,000,00000E00,004,00000E30,000,00000E00,007,00000E10,00