Test: BIOMD0000000089.xml - Ok

test: BIOMD0000000089.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000089.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4025803561.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: cLc  cYc  cAn  cXc  cPn  cAm  cYm  cTn  cTm  cXm  cXn  cAc  cTc  cLm  cLn  cYn 
Simulators: BioUML  ByoDyn  MathSBML  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation cLc cYc cAn cXc cPn cAm cYm cTn cTm cXm cXn cAc cTc cLm cLn cYn
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML1,32000E-20,004,10000E-30,008,64800E-10,001,54130E00,008,47600E-10,001,46921E10,003,03000E-20,005,40200E-10,004,30300E-10,009,57000E-20,004,58500E-10,007,02700E-10,001,02965E10,004,62500E-10,006,99000E-20,001,22000E-20,00
0.0 ByoDyn1,32000E-20,004,10000E-30,008,64800E-10,001,54130E00,008,47600E-10,001,46921E10,003,03000E-20,005,40200E-10,004,30300E-10,009,57000E-20,004,58500E-10,007,02700E-10,001,02965E10,004,62500E-10,006,99000E-20,001,22000E-20,00
0.0 MathSBML1,32000E-20,004,10000E-30,008,64800E-10,001,54130E00,008,47600E-10,001,46921E10,003,03000E-20,005,40200E-10,004,30300E-10,009,57000E-20,004,58500E-10,007,02700E-10,001,02965E10,004,62500E-10,006,99000E-20,001,22000E-20,00
0.0 SBToolbox21,32000E-20,004,10000E-30,008,64800E-10,001,54130E00,008,47600E-10,001,46920E10,003,03000E-20,005,40200E-10,004,30300E-10,009,57000E-20,004,58500E-10,007,02700E-10,001,02970E10,004,62500E-10,006,99000E-20,001,22000E-20,00
0.0 SBWOdeSolver1,32000E-20,004,10000E-30,008,64800E-10,001,54130E00,008,47600E-10,001,46921E10,003,03000E-20,005,40200E-10,004,30300E-10,009,57000E-20,004,58500E-10,007,02700E-10,001,02965E10,004,62500E-10,006,99000E-20,001,22000E-20,00
0.0 VCell1,32000E-20,004,10000E-30,008,64800E-10,001,54130E00,008,47600E-10,001,46921E10,003,03000E-20,005,40200E-10,004,30300E-10,009,57000E-20,004,58500E-10,007,02700E-10,001,02965E10,004,62500E-10,006,99000E-20,001,22000E-20,00
0.0 copasi1,32000E-20,004,10000E-30,008,64800E-10,001,54130E00,008,47600E-10,001,46921E10,003,03000E-20,005,40200E-10,004,30300E-10,009,57000E-20,004,58500E-10,007,02700E-10,001,02965E10,004,62500E-10,006,99000E-20,001,22000E-20,00
0.0 edu.kgi.roadRunner1,32000E-20,004,10000E-30,008,64800E-10,001,54130E00,008,47600E-10,001,46921E10,003,03000E-20,005,40200E-10,004,30300E-10,009,57000E-20,004,58500E-10,007,02700E-10,001,02965E10,004,62500E-10,006,99000E-20,001,22000E-20,00
0.2 BioUML2,27571E-20,007,48846E-30,008,61729E-10,001,53481E00,006,12503E-10,001,52078E10,001,63036E-10,004,97249E-10,004,37808E-10,009,09572E-20,004,57181E-10,007,61855E-10,009,76172E00,008,56059E-10,008,53922E-20,001,32297E-20,00
0.2 ByoDyn2,27571E-20,007,48846E-30,008,61729E-10,001,53481E00,006,12503E-10,001,52078E10,001,63036E-10,004,97249E-10,004,37808E-10,009,09572E-20,004,57181E-10,007,61855E-10,009,76172E00,008,56059E-10,008,53922E-20,001,32297E-20,00
0.2 MathSBML2,27571E-20,007,48846E-30,008,61729E-10,001,53481E00,006,12503E-10,001,52078E10,001,63036E-10,004,97249E-10,004,37808E-10,009,09572E-20,004,57181E-10,007,61855E-10,009,76172E00,008,56059E-10,008,53922E-20,001,32297E-20,00
0.2 SBToolbox22,27562E-20,007,48145E-30,008,61731E-10,001,53481E00,006,12485E-10,001,52075E10,001,63045E-10,004,97252E-10,004,37822E-10,009,09578E-20,004,57182E-10,007,61842E-10,009,76172E00,008,56091E-10,008,53670E-20,001,32302E-20,00
0.2 SBWOdeSolver2,27570E-20,007,48849E-30,008,61729E-10,001,53481E00,006,12504E-10,001,52078E10,001,63034E-10,004,97249E-10,004,37808E-10,009,09572E-20,004,57181E-10,007,61855E-10,009,76172E00,008,56055E-10,008,53926E-20,001,32297E-20,00
0.2 VCell2,27571E-20,007,48846E-30,008,61729E-10,001,53481E00,006,12503E-10,001,52078E10,001,63036E-10,004,97249E-10,004,37808E-10,009,09572E-20,004,57181E-10,007,61855E-10,009,76172E00,008,56059E-10,008,53922E-20,001,32297E-20,00
0.2 copasi2,27571E-20,007,48846E-30,008,61729E-10,001,53481E00,006,12503E-10,001,52078E10,001,63036E-10,004,97249E-10,004,37808E-10,009,09572E-20,004,57181E-10,007,61855E-10,009,76172E00,008,56059E-10,008,53922E-20,001,32297E-20,00
0.2 edu.kgi.roadRunner2,27571E-20,007,48846E-30,008,61729E-10,001,53481E00,006,12503E-10,001,52078E10,001,63036E-10,004,97249E-10,004,37808E-10,009,09572E-20,004,57181E-10,007,61855E-10,009,76172E00,008,56059E-10,008,53922E-20,001,32297E-20,00
0.4 BioUML3,06641E-20,001,26532E-20,008,62168E-10,001,52681E00,004,36109E-10,001,56073E10,001,96059E-10,004,56323E-10,004,47554E-10,008,61663E-20,004,55431E-10,008,37815E-10,009,25475E00,001,10996E00,001,18656E-10,001,61535E-20,00
0.4 ByoDyn3,06641E-20,001,26532E-20,008,62168E-10,001,52681E00,004,36109E-10,001,56073E10,001,96059E-10,004,56323E-10,004,47554E-10,008,61663E-20,004,55431E-10,008,37815E-10,009,25475E00,001,10996E00,001,18656E-10,001,61535E-20,00
0.4 MathSBML3,06641E-20,001,26532E-20,008,62168E-10,001,52681E00,004,36109E-10,001,56073E10,001,96059E-10,004,56323E-10,004,47554E-10,008,61663E-20,004,55431E-10,008,37815E-10,009,25475E00,001,10996E00,001,18656E-10,001,61535E-20,00
0.4 SBToolbox23,06673E-20,001,26407E-20,008,62166E-10,001,52682E00,004,36025E-10,001,56073E10,001,96103E-10,004,56319E-10,004,47605E-10,008,61676E-20,004,55434E-10,008,37777E-10,009,25479E00,001,11010E00,001,18597E-10,001,61474E-20,00
0.4 SBWOdeSolver3,06639E-20,001,26531E-20,008,62169E-10,001,52681E00,004,36111E-10,001,56073E10,001,96057E-10,004,56324E-10,004,47554E-10,008,61663E-20,004,55431E-10,008,37815E-10,009,25475E00,001,10995E00,001,18656E-10,001,61535E-20,00
0.4 VCell3,06641E-20,001,26532E-20,008,62168E-10,001,52681E00,004,36109E-10,001,56073E10,001,96059E-10,004,56323E-10,004,47554E-10,008,61663E-20,004,55431E-10,008,37815E-10,009,25475E00,001,10996E00,001,18656E-10,001,61535E-20,00
0.4 copasi3,06641E-20,001,26532E-20,008,62168E-10,001,52681E00,004,36109E-10,001,56073E10,001,96059E-10,004,56323E-10,004,47554E-10,008,61663E-20,004,55431E-10,008,37815E-10,009,25475E00,001,10996E00,001,18656E-10,001,61535E-20,00
0.4 edu.kgi.roadRunner3,06641E-20,001,26532E-20,008,62168E-10,001,52681E00,004,36109E-10,001,56073E10,001,96059E-10,004,56323E-10,004,47554E-10,008,61663E-20,004,55431E-10,008,37815E-10,009,25475E00,001,10996E00,001,18656E-10,001,61535E-20,00
0.6 BioUML3,56521E-20,001,62197E-20,008,66624E-10,001,51731E00,003,06349E-10,001,59204E10,001,82268E-10,004,18577E-10,004,63591E-10,008,13318E-20,004,53242E-10,009,24169E-10,008,77893E00,001,26409E00,001,54948E-10,002,06602E-20,00
0.6 ByoDyn3,56521E-20,001,62197E-20,008,66624E-10,001,51731E00,003,06349E-10,001,59204E10,001,82268E-10,004,18577E-10,004,63591E-10,008,13318E-20,004,53242E-10,009,24169E-10,008,77893E00,001,26409E00,001,54948E-10,002,06602E-20,00
0.6 MathSBML3,56521E-20,001,62197E-20,008,66624E-10,001,51731E00,003,06349E-10,001,59204E10,001,82268E-10,004,18577E-10,004,63591E-10,008,13318E-20,004,53242E-10,009,24169E-10,008,77893E00,001,26409E00,001,54948E-10,002,06602E-20,00
0.6 SBToolbox23,56605E-20,001,62114E-20,008,66621E-10,001,51733E00,003,06143E-10,001,59212E10,001,82364E-10,004,18558E-10,004,63702E-10,008,13345E-20,004,53238E-10,009,24080E-10,008,77908E00,001,26445E00,001,54855E-10,002,06382E-20,11
0.6 SBWOdeSolver3,56517E-20,001,62196E-20,008,66624E-10,001,51731E00,003,06351E-10,001,59204E10,001,82266E-10,004,18578E-10,004,63592E-10,008,13318E-20,004,53242E-10,009,24169E-10,008,77893E00,001,26409E00,001,54948E-10,002,06603E-20,00
0.6 VCell3,56521E-20,001,62197E-20,008,66624E-10,001,51731E00,003,06349E-10,001,59204E10,001,82268E-10,004,18577E-10,004,63591E-10,008,13318E-20,004,53242E-10,009,24169E-10,008,77893E00,001,26409E00,001,54948E-10,002,06602E-20,00
0.6 copasi3,56521E-20,001,62197E-20,008,66624E-10,001,51731E00,003,06349E-10,001,59204E10,001,82268E-10,004,18577E-10,004,63591E-10,008,13318E-20,004,53242E-10,009,24169E-10,008,77893E00,001,26409E00,001,54948E-10,002,06602E-20,00
0.6 edu.kgi.roadRunner3,56521E-20,001,62197E-20,008,66624E-10,001,51731E00,003,06349E-10,001,59204E10,001,82268E-10,004,18577E-10,004,63591E-10,008,13318E-20,004,53242E-10,009,24169E-10,008,77893E00,001,26409E00,001,54948E-10,002,06602E-20,00
0.8 BioUML3,84970E-20,001,76796E-20,008,75322E-10,001,50632E00,002,12711E-10,001,61697E10,001,52774E-10,003,84577E-10,004,85428E-10,007,65003E-20,004,50612E-10,001,01684E00,008,33923E00,001,34710E00,001,87136E-10,002,57521E-20,00
0.8 ByoDyn3,84970E-20,001,76796E-20,008,75322E-10,001,50632E00,002,12711E-10,001,61697E10,001,52774E-10,003,84577E-10,004,85428E-10,007,65003E-20,004,50612E-10,001,01684E00,008,33923E00,001,34710E00,001,87136E-10,002,57521E-20,00
0.8 MathSBML3,84970E-20,001,76796E-20,008,75322E-10,001,50632E00,002,12711E-10,001,61697E10,001,52774E-10,003,84577E-10,004,85428E-10,007,65003E-20,004,50612E-10,001,01684E00,008,33923E00,001,34710E00,001,87136E-10,002,57521E-20,00
0.8 SBToolbox23,85079E-20,001,76826E-20,008,75317E-10,001,50635E00,002,12418E-10,141,61701E10,001,52825E-10,003,84549E-10,004,85566E-10,007,65043E-20,004,50611E-10,001,01672E00,008,33949E00,001,34748E00,001,87063E-10,002,57207E-20,12
0.8 SBWOdeSolver3,84970E-20,001,76794E-20,008,75323E-10,001,50632E00,002,12714E-10,001,61697E10,001,52773E-10,003,84577E-10,004,85429E-10,007,65003E-20,004,50612E-10,001,01684E00,008,33924E00,001,34710E00,001,87136E-10,002,57521E-20,00
0.8 VCell3,84970E-20,001,76796E-20,008,75322E-10,001,50632E00,002,12711E-10,001,61697E10,001,52774E-10,003,84577E-10,004,85428E-10,007,65003E-20,004,50612E-10,001,01684E00,008,33923E00,001,34710E00,001,87136E-10,002,57521E-20,00
0.8 copasi3,84970E-20,001,76796E-20,008,75322E-10,001,50632E00,002,12711E-10,001,61697E10,001,52774E-10,003,84577E-10,004,85428E-10,007,65003E-20,004,50612E-10,001,01684E00,008,33923E00,001,34710E00,001,87136E-10,002,57521E-20,00
0.8 edu.kgi.roadRunner3,84970E-20,001,76796E-20,008,75322E-10,001,50632E00,002,12711E-10,001,61697E10,001,52774E-10,003,84577E-10,004,85428E-10,007,65003E-20,004,50612E-10,001,01684E00,008,33923E00,001,34710E00,001,87136E-10,002,57521E-20,00
1.0 BioUML3,97980E-20,001,75296E-20,008,88320E-10,001,49388E00,001,46303E-10,001,63724E10,001,21896E-10,003,54536E-10,005,10165E-10,007,17411E-20,004,47544E-10,001,11325E00,007,93868E00,001,38005E00,002,12459E-10,003,05784E-20,00
1.0 ByoDyn3,97980E-20,001,75296E-20,008,88320E-10,001,49388E00,001,46303E-10,001,63724E10,001,21896E-10,003,54536E-10,005,10165E-10,007,17411E-20,004,47544E-10,001,11325E00,007,93868E00,001,38005E00,002,12459E-10,003,05784E-20,00
1.0 MathSBML3,97980E-20,001,75296E-20,008,88320E-10,001,49388E00,001,46303E-10,001,63724E10,001,21896E-10,003,54536E-10,005,10165E-10,007,17411E-20,004,47544E-10,001,11325E00,007,93868E00,001,38005E00,002,12459E-10,003,05784E-20,00
1.0 SBToolbox23,98124E-20,001,75455E-20,008,88305E-10,001,49387E00,001,45929E-10,261,63731E10,001,21937E-10,003,54510E-10,005,10234E-10,007,17465E-20,004,47546E-10,001,11311E00,007,93901E00,001,38053E00,002,12421E-10,003,05424E-20,12
1.0 SBWOdeSolver3,97979E-20,001,75295E-20,008,88320E-10,001,49388E00,001,46306E-10,001,63724E10,001,21896E-10,003,54536E-10,005,10165E-10,007,17411E-20,004,47544E-10,001,11325E00,007,93868E00,001,38005E00,002,12458E-10,003,05783E-20,00
1.0 VCell3,97980E-20,001,75296E-20,008,88320E-10,001,49388E00,001,46303E-10,001,63724E10,001,21896E-10,003,54536E-10,005,10165E-10,007,17411E-20,004,47544E-10,001,11325E00,007,93868E00,001,38005E00,002,12459E-10,003,05784E-20,00
1.0 copasi3,97980E-20,001,75296E-20,008,88320E-10,001,49388E00,001,46303E-10,001,63724E10,001,21896E-10,003,54536E-10,005,10165E-10,007,17411E-20,004,47544E-10,001,11325E00,007,93868E00,001,38005E00,002,12459E-10,003,05784E-20,00
1.0 edu.kgi.roadRunner3,97980E-20,001,75296E-20,008,88320E-10,001,49388E00,001,46303E-10,001,63724E10,001,21896E-10,003,54536E-10,005,10165E-10,007,17411E-20,004,47544E-10,001,11325E00,007,93868E00,001,38005E00,002,12459E-10,003,05784E-20,00
1.2 BioUML4,00062E-20,001,64253E-20,009,05568E-10,001,48007E00,009,98908E-20,001,65415E10,009,51818E-20,003,28380E-10,005,35305E-10,006,71303E-20,004,44047E-10,001,21178E00,007,57766E00,001,37828E00,002,30296E-10,003,46331E-20,00
1.2 ByoDyn4,00062E-20,001,64253E-20,009,05568E-10,001,48007E00,009,98908E-20,001,65415E10,009,51818E-20,003,28380E-10,005,35305E-10,006,71303E-20,004,44047E-10,001,21178E00,007,57766E00,001,37828E00,002,30296E-10,003,46331E-20,00
1.2 MathSBML4,00062E-20,001,64253E-20,009,05568E-10,001,48007E00,009,98908E-20,001,65415E10,009,51818E-20,003,28380E-10,005,35305E-10,006,71303E-20,004,44047E-10,001,21178E00,007,57766E00,001,37828E00,002,30296E-10,003,46331E-20,00
1.2 SBToolbox24,00173E-20,001,64403E-20,009,05545E-10,001,48008E00,009,95490E-20,341,65420E10,009,51638E-20,003,28356E-10,005,35312E-10,006,71361E-20,004,44052E-10,001,21161E00,007,57795E00,001,37868E00,002,30314E-10,003,46044E-20,00
1.2 SBWOdeSolver4,00061E-20,001,64252E-20,009,05569E-10,001,48007E00,009,98927E-20,001,65415E10,009,51827E-20,003,28381E-10,005,35304E-10,006,71303E-20,004,44047E-10,001,21178E00,007,57767E00,001,37828E00,002,30296E-10,003,46330E-20,00
1.2 VCell4,00062E-20,001,64253E-20,009,05568E-10,001,48007E00,009,98908E-20,001,65415E10,009,51818E-20,003,28380E-10,005,35305E-10,006,71303E-20,004,44047E-10,001,21178E00,007,57766E00,001,37828E00,002,30296E-10,003,46331E-20,00
1.2 copasi4,00062E-20,001,64253E-20,009,05568E-10,001,48007E00,009,98908E-20,001,65415E10,009,51819E-20,003,28380E-10,005,35305E-10,006,71303E-20,004,44047E-10,001,21178E00,007,57766E00,001,37828E00,002,30296E-10,003,46331E-20,00
1.2 edu.kgi.roadRunner4,00062E-20,001,64253E-20,009,05568E-10,001,48007E00,009,98908E-20,001,65415E10,009,51818E-20,003,28380E-10,005,35305E-10,006,71303E-20,004,44047E-10,001,21178E00,007,57766E00,001,37828E00,002,30296E-10,003,46331E-20,00
1.4 BioUML3,94527E-20,001,48935E-20,009,26960E-10,001,46496E00,006,78288E-20,001,66862E10,007,40744E-20,003,05832E-10,005,59445E-10,006,27371E-20,004,40137E-10,001,31145E00,007,25478E00,001,35277E00,002,41071E-10,003,77126E-20,00
1.4 ByoDyn3,94527E-20,001,48935E-20,009,26960E-10,001,46496E00,006,78288E-20,001,66862E10,007,40744E-20,003,05832E-10,005,59445E-10,006,27371E-20,004,40137E-10,001,31145E00,007,25478E00,001,35277E00,002,41071E-10,003,77126E-20,00
1.4 MathSBML3,94527E-20,001,48935E-20,009,26960E-10,001,46496E00,006,78288E-20,001,66862E10,007,40744E-20,003,05832E-10,005,59445E-10,006,27371E-20,004,40137E-10,001,31145E00,007,25478E00,001,35277E00,002,41071E-10,003,77126E-20,00
1.4 SBToolbox23,94629E-20,001,49063E-20,009,26928E-10,001,46500E00,006,75108E-20,471,66870E10,007,40172E-20,003,05807E-10,005,59396E-10,006,27420E-20,004,40139E-10,001,31130E00,007,25494E00,001,35305E00,002,41125E-10,003,76928E-20,00
1.4 SBWOdeSolver3,94527E-20,001,48934E-20,009,26960E-10,001,46496E00,006,78303E-20,001,66862E10,007,40753E-20,003,05832E-10,005,59444E-10,006,27371E-20,004,40137E-10,001,31145E00,007,25479E00,001,35277E00,002,41070E-10,003,77124E-20,00
1.4 VCell3,94527E-20,001,48935E-20,009,26960E-10,001,46496E00,006,78288E-20,001,66862E10,007,40744E-20,003,05832E-10,005,59445E-10,006,27371E-20,004,40137E-10,001,31145E00,007,25478E00,001,35277E00,002,41071E-10,003,77126E-20,00
1.4 copasi3,94527E-20,001,48935E-20,009,26960E-10,001,46496E00,006,78288E-20,001,66862E10,007,40744E-20,003,05832E-10,005,59445E-10,006,27371E-20,004,40137E-10,001,31145E00,007,25478E00,001,35277E00,002,41071E-10,003,77126E-20,00
1.4 edu.kgi.roadRunner3,94527E-20,001,48935E-20,009,26960E-10,001,46496E00,006,78288E-20,001,66862E10,007,40744E-20,003,05832E-10,005,59445E-10,006,27371E-20,004,40137E-10,001,31145E00,007,25478E00,001,35277E00,002,41071E-10,003,77126E-20,00
1.6 BioUML3,83748E-20,001,32797E-20,009,52352E-10,001,44866E00,004,58751E-20,001,68132E10,005,82733E-20,002,86507E-10,005,82043E-10,005,86158E-20,004,35839E-10,001,41169E00,006,96773E00,001,31120E00,002,45670E-10,003,98150E-20,00
1.6 ByoDyn3,83748E-20,001,32797E-20,009,52352E-10,001,44866E00,004,58751E-20,001,68132E10,005,82733E-20,002,86507E-10,005,82043E-10,005,86158E-20,004,35839E-10,001,41169E00,006,96773E00,001,31120E00,002,45670E-10,003,98150E-20,00
1.6 MathSBML3,83748E-20,001,32797E-20,009,52352E-10,001,44866E00,004,58751E-20,001,68132E10,005,82733E-20,002,86507E-10,005,82042E-10,005,86158E-20,004,35839E-10,001,41169E00,006,96773E00,001,31120E00,002,45670E-10,003,98150E-20,00
1.6 SBToolbox23,83812E-20,001,32868E-20,009,52312E-10,001,44864E00,004,56200E-20,561,68130E10,005,81973E-20,132,86484E-10,005,81966E-10,005,86198E-20,004,35845E-10,001,41158E00,006,96778E00,001,31138E00,002,45734E-10,003,98027E-20,00
1.6 SBWOdeSolver3,83747E-20,001,32797E-20,009,52353E-10,001,44866E00,004,58762E-20,001,68132E10,005,82742E-20,002,86508E-10,005,82042E-10,005,86159E-20,004,35838E-10,001,41169E00,006,96774E00,001,31119E00,002,45670E-10,003,98149E-20,00
1.6 VCell3,83748E-20,001,32797E-20,009,52352E-10,001,44866E00,004,58751E-20,001,68132E10,005,82733E-20,002,86507E-10,005,82043E-10,005,86158E-20,004,35839E-10,001,41169E0