Test: BIOMD0000000091.xml - Ok

test: BIOMD0000000091.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000091.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL2223638385.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Hsp90  ROS  ATP  HCom  NatP  AggP  MisP  DiH  HSE  TriH  ADP  HSF1  MCom  X  HSETriH 
Simulators: BioUML  ByoDyn  CVODE  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation Hsp90 ROS ATP HCom NatP AggP MisP DiH HSE TriH ADP HSF1 MCom X HSETriH
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.0 CVODE3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00 - - 1,00000E20,000,00000E00,000,00000E00,00 - -
0.0 SBToolbox23,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner3,00000E50,001,00000E20,001,00000E40,005,90000E30,006,00000E60,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E30,001,00000E20,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML2,97506E50,001,00000E20,001,08857E40,006,00000E30,005,99761E60,00-8,02678E-120,008,06388E-40,001,09471E-70,001,00000E00,001,09610E-100,001,14298E20,004,03354E-50,002,38924E30,002,00000E-10,006,25580E-130,00
0.2 ByoDyn2,97506E50,001,00000E20,001,08857E40,006,00000E30,005,99761E60,00-8,02678E-120,008,06388E-40,001,09470E-70,001,00000E00,001,09609E-100,001,14295E20,004,03354E-50,002,38924E30,002,00000E-10,006,25573E-130,00
0.2 CVODE2,97505E50,001,00020E20,001,08857E40,006,00000E30,005,99761E60,00-8,02759E-120,008,06550E-40,001,09470E-70,001,00000E00,001,09610E-100,001,14295E20,004,03354E-50,002,38948E30,002,00000E-10,006,25575E-130,00
0.2 Jarnac2,97506E50,001,00000E20,001,08856E40,006,00000E30,005,99761E60,00-8,02679E-120,008,06388E-40,001,09470E-70,001,00000E00,001,09577E-100,001,14359E20,004,03354E-50,002,38923E30,002,00000E-10,00-2,04636E-120,00
0.2 MathSBML2,97506E50,001,00000E20,001,08857E40,006,00000E30,005,99761E60,00-8,02678E-120,008,06388E-40,001,09471E-70,001,00000E00,001,09610E-100,001,14295E20,004,03354E-50,002,38924E30,002,00000E-10,006,25576E-130,00
0.2 Oscill8 Core2,97506E50,001,00000E20,001,08857E40,006,00000E30,005,99761E60,00-8,02678E-120,008,06387E-40,001,59340E-61,36E3 - - 3,00588E-52,74E7 - - 4,03353E-50,002,38924E30,002,00000E-10,00 - -
0.2 SBToolbox22,97502E50,001,00000E20,001,08858E40,006,00000E30,005,99760E60,00-8,02674E-120,008,06384E-40,001,09262E-70,191,00000E00,001,09433E-100,131,13767E20,454,03357E-50,002,38922E30,002,00000E-10,006,24354E-130,00
0.2 SBWOdeSolver2,97506E50,001,00000E20,001,08857E40,006,00000E30,005,99761E60,00-8,02678E-120,008,06388E-40,001,09471E-70,001,00000E00,001,09609E-100,001,14307E20,004,03354E-50,002,38924E30,002,00000E-10,006,25594E-130,00
0.2 copasi2,97506E50,001,00000E20,001,08857E40,006,00000E30,005,99761E60,00-8,02678E-120,008,06388E-40,001,09471E-70,001,00000E00,001,09624E-100,001,14276E20,004,03354E-50,002,38924E30,002,00000E-10,001,59162E-120,00
0.2 edu.kgi.roadRunner2,97506E50,001,00000E20,001,08856E40,006,00000E30,005,99761E60,00-8,02678E-120,008,06388E-40,001,09470E-70,001,00000E00,001,09627E-100,001,14387E20,004,03354E-50,002,38924E30,002,00000E-10,001,59162E-120,00
0.4 BioUML2,95133E50,001,00000E20,001,09578E40,006,00000E30,005,99525E60,00-1,61149E-110,008,12551E-40,006,04623E-80,001,00000E00,001,62720E-100,004,22288E10,004,06596E-50,004,75652E30,004,00000E-10,002,00432E-120,00
0.4 ByoDyn2,95133E50,001,00000E20,001,09578E40,006,00000E30,005,99525E60,00-1,61149E-110,008,12551E-40,006,04616E-80,001,00000E00,001,62719E-100,004,22286E10,004,06596E-50,004,75652E30,004,00000E-10,002,00430E-120,00
0.4 CVODE2,95132E50,001,00040E20,001,09578E40,006,00000E30,005,99525E60,00-1,61181E-110,008,12879E-40,006,04621E-80,001,00000E00,001,62720E-100,004,22309E10,004,06597E-50,004,75748E30,004,00000E-10,002,00431E-120,00
0.4 Jarnac2,95133E50,001,00000E20,001,09578E40,006,00000E30,005,99525E60,00-1,61149E-110,008,12551E-40,006,04635E-80,001,00000E00,001,62618E-100,004,22455E10,004,06596E-50,004,75651E30,004,00000E-10,00-2,04636E-120,00
0.4 MathSBML2,95133E50,001,00000E20,001,09578E40,006,00000E30,005,99525E60,00-1,61149E-110,008,12551E-40,006,04622E-80,001,00000E00,001,62720E-100,004,22286E10,004,06596E-50,004,75652E30,004,00000E-10,002,00431E-120,00
0.4 Oscill8 Core2,95134E50,001,00000E20,001,09578E40,006,00000E30,005,99525E60,00-1,61149E-110,008,12549E-40,005,56792E-69,11E3 - - 5,65165E-53,47E7 - - 4,06595E-50,004,75652E30,004,00000E-10,00 - -
0.4 SBToolbox22,95135E50,001,00000E20,001,09580E40,006,00000E30,005,99521E60,00-1,61148E-110,008,12548E-40,006,02727E-80,311,00000E00,001,62416E-100,124,21092E10,284,06594E-50,004,75649E30,004,00000E-10,002,00043E-120,00
0.4 SBWOdeSolver2,95133E50,001,00000E20,001,09578E40,006,00000E30,005,99525E60,00-1,61149E-110,008,12551E-40,006,04625E-80,001,00000E00,001,62718E-100,004,22305E10,004,06596E-50,004,75652E30,004,00000E-10,002,00433E-120,00
0.4 copasi2,95133E50,001,00000E20,001,09578E40,006,00000E30,005,99525E60,00-1,61149E-110,008,12551E-40,006,04624E-80,001,00000E00,001,62748E-100,004,22352E10,004,06596E-50,004,75652E30,004,00000E-10,002,95586E-120,00
0.4 edu.kgi.roadRunner2,95133E50,001,00000E20,001,09578E40,006,00000E30,005,99525E60,00-1,61149E-110,008,12551E-40,006,04618E-80,001,00000E00,001,62749E-100,004,22421E10,004,06596E-50,004,75652E30,004,00000E-10,002,72848E-120,00
0.6 BioUML2,92782E50,001,00000E20,001,09565E40,006,00000E30,005,99290E60,00-2,42647E-110,008,18757E-40,001,58469E-80,001,00000E00,001,74707E-100,004,35170E10,004,09861E-50,007,10216E30,006,00000E-10,003,67733E-120,00
0.6 ByoDyn2,92782E50,001,00000E20,001,09565E40,006,00000E30,005,99290E60,00-2,42647E-110,008,18757E-40,001,58463E-80,001,00000E00,001,74705E-100,004,35170E10,004,09861E-50,007,10216E30,006,00000E-10,003,67730E-120,00
0.6 CVODE2,92780E50,001,00060E20,001,09565E40,006,00000E30,005,99290E60,00-2,42721E-110,008,19254E-40,001,58465E-80,001,00000E00,001,74707E-100,004,35229E10,004,09864E-50,007,10430E30,006,00000E-10,003,67733E-120,00
0.6 Jarnac2,92782E50,001,00000E20,001,09565E40,006,00000E30,005,99290E60,00-2,42648E-110,008,18757E-40,001,58497E-80,001,00000E00,001,74517E-100,004,35198E10,004,09861E-50,007,10214E30,006,00000E-10,00-2,95586E-120,00
0.6 MathSBML2,92782E50,001,00000E20,001,09565E40,006,00000E30,005,99290E60,00-2,42647E-110,008,18753E-40,001,58469E-80,001,00000E00,001,74707E-100,004,35170E10,004,09859E-50,007,10216E30,006,00000E-10,003,67733E-120,00
0.6 Oscill8 Core2,92784E50,001,00000E20,001,09565E40,006,00000E30,005,99290E60,00-2,42647E-110,008,18754E-40,001,15194E-57,26E4 - - 7,97615E-54,56E7 - - 4,09859E-50,007,10216E30,006,00000E-10,00 - -
0.6 SBToolbox22,92787E50,001,00000E20,001,09561E40,006,00000E30,005,99291E60,00-2,42645E-110,008,18751E-40,001,56749E-81,11,00000E00,001,74306E-100,124,34856E10,004,09860E-50,007,10219E30,006,00000E-10,003,66924E-120,00
0.6 SBWOdeSolver2,92782E50,001,00000E20,001,09565E40,006,00000E30,005,99290E60,00-2,42647E-110,008,18757E-40,001,58472E-80,001,00000E00,001,74705E-100,004,35171E10,004,09861E-50,007,10216E30,006,00000E-10,003,67732E-120,00
0.6 copasi2,92782E50,001,00000E20,001,09565E40,006,00000E30,005,99290E60,00-2,42647E-110,008,18757E-40,001,58470E-80,001,00000E00,001,74748E-100,004,35249E10,004,09861E-50,007,10216E30,006,00000E-10,004,77485E-120,00
0.6 edu.kgi.roadRunner2,92782E50,001,00000E20,001,09565E40,006,00000E30,005,99290E60,00-2,42647E-110,008,18757E-40,001,58465E-80,001,00000E00,001,74745E-100,004,35119E10,004,09861E-50,007,10216E30,006,00000E-10,004,54747E-120,00
0.8 BioUML2,90453E50,001,00000E20,001,09487E40,006,00000E30,005,99058E60,00-3,24768E-110,008,25005E-40,00-2,48019E-80,001,00000E00,001,52531E-100,005,13309E10,004,13148E-50,009,42643E30,008,00000E-10,005,26746E-120,00
0.8 ByoDyn2,90453E50,001,00000E20,001,09487E40,006,00000E30,005,99058E60,00-3,24768E-110,008,25005E-40,00-2,48025E-80,001,00000E00,001,52529E-100,005,13309E10,004,13148E-50,009,42643E30,008,00000E-10,005,26742E-120,00
0.8 CVODE2,90449E50,001,00080E20,001,09487E40,006,00000E30,005,99058E60,00-3,24899E-110,008,25675E-40,00-2,48026E-80,001,00000E00,001,52530E-100,005,13421E10,004,13153E-50,009,43022E30,008,00000E-10,005,26746E-120,00
0.8 Jarnac2,90453E50,001,00000E20,001,09487E40,006,00000E30,005,99058E60,00-3,24768E-110,008,25005E-40,00-2,47988E-80,001,00000E00,001,52238E-100,005,13310E10,004,13148E-50,009,42640E30,008,00000E-10,00-3,86535E-120,00
0.8 MathSBML2,90453E50,001,00000E20,001,09487E40,006,00000E30,005,99058E60,00-3,24768E-110,008,25013E-40,00-2,48019E-80,001,00000E00,001,52531E-100,005,13309E10,004,13151E-50,009,42643E30,008,00000E-10,005,26746E-120,00
0.8 Oscill8 Core2,90455E50,001,00000E20,001,09487E40,006,00000E30,005,99058E60,00-3,24767E-110,008,25000E-40,001,89697E-57,61E4 - - 1,00140E-46,56E7 - - 4,13146E-50,009,42642E30,008,00000E-10,00 - -
0.8 SBToolbox22,90450E50,001,00000E20,001,09490E40,006,00000E30,005,99061E60,00-3,24770E-110,008,24995E-40,00-2,49586E-80,631,00000E00,001,52076E-100,115,13228E10,004,13146E-50,009,42645E30,008,00000E-10,005,25373E-120,00
0.8 SBWOdeSolver2,90453E50,001,00000E20,001,09487E40,006,00000E30,005,99058E60,00-3,24768E-110,008,25006E-40,00-2,48016E-80,001,00000E00,001,52528E-100,005,13309E10,004,13148E-50,009,42642E30,008,00000E-10,005,26742E-120,00
0.8 copasi2,90453E50,001,00000E20,001,09487E40,006,00000E30,005,99058E60,00-3,24768E-110,008,25005E-40,00-2,48018E-80,001,00000E00,001,52585E-100,005,13391E10,004,13148E-50,009,42643E30,008,00000E-10,006,59384E-120,00
0.8 edu.kgi.roadRunner2,90453E50,001,00000E20,001,09487E40,006,00000E30,005,99058E60,00-3,24768E-110,008,25005E-40,00-2,48023E-80,001,00000E00,001,52579E-100,005,13270E10,004,13148E-50,009,42643E30,008,00000E-10,006,13909E-120,00
1.0 BioUML2,88145E50,001,00000E20,001,09404E40,006,00000E30,005,98828E60,00-4,07514E-110,008,31296E-40,00-6,18692E-80,001,00000E00,001,02176E-100,005,96497E10,004,16457E-50,001,17296E40,001,00000E00,006,46764E-120,00
1.0 ByoDyn2,88145E50,001,00000E20,001,09404E40,006,00000E30,005,98828E60,00-4,07514E-110,008,31296E-40,00-6,18697E-80,001,00000E00,001,02174E-100,005,96497E10,004,16457E-50,001,17296E40,001,00000E00,006,46758E-120,00
1.0 CVODE2,88139E50,001,00100E20,101,09403E40,006,00000E30,005,98827E60,00-4,07721E-110,008,32143E-40,10-6,18705E-80,001,00000E00,001,02174E-100,005,96679E10,004,16466E-50,001,17355E40,001,00000E00,006,46762E-120,00
1.0 Jarnac2,88145E50,001,00000E20,001,09404E40,006,00000E30,005,98828E60,00-4,07515E-110,008,31296E-40,00-6,18648E-80,001,00000E00,001,01767E-100,005,96496E10,004,16457E-50,001,17295E40,001,00000E00,00-3,18323E-120,00
1.0 MathSBML2,88145E50,001,00000E20,001,09404E40,006,00000E30,005,98828E60,00-4,07514E-110,008,31296E-40,00-6,18692E-80,001,00000E00,001,02176E-100,005,96497E10,004,16457E-50,001,17296E40,001,00000E00,006,46764E-120,00
1.0 Oscill8 Core2,88147E50,001,00000E20,001,09404E40,006,00000E30,005,98828E60,00-4,07512E-110,008,31290E-40,002,75176E-54,45E4 - - 1,17963E-41,15E8 - - 4,16455E-50,001,17296E40,001,00000E00,00 - -
1.0 SBToolbox22,88142E50,001,00000E20,001,09401E40,006,00000E30,005,98831E60,00-4,07514E-110,008,31269E-40,00-6,20156E-80,231,00000E00,001,01769E-100,005,96484E10,004,16444E-50,001,17295E40,001,00000E00,006,44616E-120,00
1.0 SBWOdeSolver2,88145E50,001,00000E20,001,09404E40,006,00000E30,005,98828E60,00-4,07514E-110,008,31296E-40,00-6,18688E-80,001,00000E00,001,02174E-100,005,96497E10,004,16457E-50,001,17296E40,001,00000E00,006,46757E-120,00
1.0 copasi2,88145E50,001,00000E20,001,09403E40,006,00000E30,005,98828E60,00-4,07514E-110,008,31296E-40,00-6,18691E-80,001,00000E00,001,02239E-100,005,96551E10,004,16457E-50,001,17296E40,001,00000E00,007,27596E-120,00
1.0 edu.kgi.roadRunner2,88145E50,001,00000E20,001,09404E40,006,00000E30,005,98828E60,00-4,07514E-110,008,31296E-40,00-6,18696E-80,001,00000E00,001,02233E-100,005,96461E10,004,16457E-50,001,17296E40,001,00000E00,007,50333E-120,00
1.2 BioUML2,85858E50,001,00000E20,001,09321E40,006,00000E30,005,98600E60,00-4,90890E-110,008,37630E-40,00-9,57026E-80,001,00000E00,002,87759E-110,006,79332E10,004,19790E-50,001,40118E40,001,20000E00,007,03069E-120,00
1.2 ByoDyn2,85858E50,001,00000E20,001,09321E40,006,00000E30,005,98600E60,00-4,90890E-110,008,37630E-40,00-9,57031E-80,001,00000E00,002,87737E-110,006,79332E10,004,19790E-50,001,40118E40,001,20000E00,007,03062E-120,00
1.2 CVODE2,85849E50,001,00120E20,121,09320E40,006,00000E30,005,98599E60,00-4,91191E-110,008,38659E-40,12-9,57048E-80,001,00000E00,002,87712E-110,006,79599E10,004,19802E-50,001,40203E40,001,20000E00,007,03065E-120,00
1.2 Jarnac2,85858E50,001,00000E20,001,09321E40,006,00000E30,005,98600E60,00-4,90891E-110,008,37630E-40,00-9,56969E-80,001,00000E00,002,82498E-110,006,79330E10,004,19789E-50,001,40118E40,001,20000E00,00-4,32010E-120,00
1.2 MathSBML2,85858E50,001,00000E20,001,09321E40,006,00000E30,005,98600E60,00-4,90890E-110,008,37630E-40,00-9,57026E-80,001,00000E00,002,87759E-110,006,79332E10,004,19790E-50,001,40118E40,001,20000E00,007,03069E-120,00
1.2 Oscill8 Core2,85860E50,001,00000E20,001,09321E40,006,00000E30,005,98600E60,00-4,90888E-110,008,37623E-40,003,68282E-53,85E4 - - 1,33507E-4100 - - 4,19786E-50,001,40118E40,001,20000E00,00 - -
1.2 SBToolbox22,85854E50,001,00000E20,001,09320E40,006,00000E30,005,98601E60,00-4,90887E-110,008,37603E-40,00-9,58483E-80,151,00000E00,002,85982E-110,006,79344E10,004,19771E-50,001,40114E40,001,20000E00,006,99485E-120,00
1.2 SBWOdeSolver2,85858E50,001,00000E20,001,09321E40,006,00000E30,005,98600E60,00-4,90890E-110,008,37630E-40,00-9,57022E-80,001,00000E00,002,87737E-110,006,79332E10,004,19790E-50,001,40118E40,001,20000E00,007,03058E-120,00
1.2 copasi2,85858E50,001,00000E20,001,09321E40,006,00000E30,005,98600E60,00-4,90890E-110,008,37630E-40,00-9,57025E-80,001,00000E00,002,88456E-110,006,79380E10,004,19790E-50,001,40118E40,001,20000E00,008,41283E-120,00
1.2 edu.kgi.roadRunner2,85858E50,001,00000E20,001,09321E40,006,00000E30,005,98600E60,00-4,90890E-110,008,37630E-40,00-9,57029E-80,001,00000E00,002,88433E-110,006,79325E10,004,19790E-50,001,40118E40,001,20000E00,008,18545E-120,00
1.4 BioUML2,83591E50,001,00000E20,001,09239E40,006,00000E30,005,98374E60,00-5,74901E-110,008,44007E-40,00-1,26616E-70,001,00000E00,00-6,32795E-110,007,61339E10,004,23145E-50,001,62734E40,001,40000E00,006,76050E-120,00
1.4 ByoDyn2,83591E50,001,00000E20,001,09239E40,006,00000E30,005,98374E60,00-5,74901E-110,008,44007E-40,00-1,26616E-70,001,00000E00,00-6,32816E-110,007,61339E10,004,23145E-50,001,62734E40,001,40000E00,006,76042E-120,00
1.4 CVODE2,83579E50,001,00140E20,141,09238E40,006,00000E30,005,98373E60,00-5,75314E-110,008,45222E-40,14-1,26619E-70,001,00000E00,00-6,32888E-110,007,61708E10,004,23162E-50,001,62848E40,001,40000E00,006,76040E-120,00