Test: BIOMD0000000093.xml - Ok

test: BIOMD0000000093.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000093.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4879478021.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: JAK  IFNRJ2_star_SOCS1  STAT1n_star_PPN  PPX  IFNRJ2_star_SOCS1_STAT1c  IFNRJ2_star_STAT1c_star  STAT1c_star_STAT1c_star  RJ  IFNRJ  STAT1n_star  STAT1n_star_STAT1n_star  STAT1c_star_STAT1c_star_PPX  PPN  STAT1n_STAT1n_star  R  IFNRJ2_star  IFNRJ2_star_SHP2_SOCS1_STAT1c  IFNRJ2_star_STAT1c  IFNRJ2  IFNRJ2_star_SHP2  STAT1c  IFNR  SOCS1  mRNAn  SHP2  STAT1n  STAT1c_star_PPX  IFNRJ2_star_SHP2_STAT1c  IFNRJ2_star_SHP2_SOCS1  mRNAc  STAT1c_star  STAT1n_star_STAT1n_star_PPN  STAT1c_STAT1c_star 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation JAK IFNRJ2_star_SOCS1 STAT1n_star_PPN PPX IFNRJ2_star_SOCS1_STAT1c IFNRJ2_star_STAT1c_star STAT1c_star_STAT1c_star RJ IFNRJ STAT1n_star STAT1n_star_STAT1n_star STAT1c_star_STAT1c_star_PPX PPN STAT1n_STAT1n_star R IFNRJ2_star IFNRJ2_star_SHP2_SOCS1_STAT1c IFNRJ2_star_STAT1c IFNRJ2 IFNRJ2_star_SHP2 STAT1c IFNR SOCS1 mRNAn SHP2 STAT1n STAT1c_star_PPX IFNRJ2_star_SHP2_STAT1c IFNRJ2_star_SHP2_SOCS1 mRNAc STAT1c_star STAT1n_star_STAT1n_star_PPN STAT1c_STAT1c_star
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML1,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,000,00000E00,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn1,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,000,00000E00,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML1,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,000,00000E00,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core - - 0,00000E00,000,00000E00,005,00000E10,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,00 - - 1,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 1,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00
0.0 SBToolbox21,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,000,00000E00,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver1,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,000,00000E00,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 VCell1,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,000,00000E00,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi1,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,00-8,30269E-160,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,007,05729E-140,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner1,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,004,44089E-150,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,002,84217E-140,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 jsim1,00000E10,000,00000E00,000,00000E00,005,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,00000E10,000,00000E00,001,00000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E30,000,00000E00,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML8,34118E00,003,55986E-600,001,21784E-370,005,00000E10,001,05085E-600,001,78283E-250,001,55164E-270,001,59391E00,006,49000E-20,001,96389E-340,008,98086E-320,008,97663E-310,006,00000E10,003,04042E-390,008,01476E00,001,01166E-90,003,56924E-630,002,38211E-100,007,15870E-60,003,06333E-120,001,00000E30,003,26413E-10,002,50096E-470,002,45635E-380,001,00000E20,001,19617E-410,002,89863E-150,006,25235E-130,001,28059E-620,002,54374E-430,002,50981E-120,005,88282E-350,001,15953E-170,00
0.2 ByoDyn8,34118E00,003,55970E-600,001,21783E-370,005,00000E10,001,05079E-600,001,78283E-250,001,55164E-270,001,59391E00,006,49000E-20,001,96388E-340,008,98085E-320,008,97662E-310,006,00000E10,003,04038E-390,008,01476E00,001,01166E-90,003,56900E-630,002,38211E-100,007,15870E-60,003,06333E-120,001,00000E30,003,26413E-10,002,50090E-470,002,45634E-380,001,00000E20,001,19614E-410,002,89863E-150,006,25235E-130,001,28052E-620,002,54371E-430,002,50981E-120,005,88279E-350,001,15953E-170,00
0.2 MathSBML8,34118E00,002,70017E-600,001,08611E-370,005,00000E10,008,01129E-610,001,79292E-250,001,57345E-270,001,59391E00,006,49000E-20,001,84358E-340,009,50722E-320,009,50325E-310,006,00000E10,002,71211E-390,008,01476E00,001,01155E-90,002,67456E-630,002,38156E-100,007,15847E-60,003,06263E-120,001,00000E30,003,26413E-10,001,88847E-470,002,30581E-380,001,00000E20,009,03576E-420,002,89965E-150,006,25165E-130,009,82954E-630,002,26769E-430,002,50953E-120,005,52286E-350,001,15993E-170,00
0.2 Oscill8 Core - - 1,63067E-410,00-9,92037E-130,005,00000E10,001,30346E-410,00 - - 2,04913E-210,001,59389E00,006,49020E-20,00-1,40735E-101006,62274E-160,005,24789E-240,006,00000E10,00 - - 8,01478E00,001,27784E-90,009,24525E-440,006,48740E-100,007,16178E-60,00 - - 1,00000E30,003,26411E-10,003,17209E-290,001,07778E-210,001,00000E20,00-1,40892E-10100 - - 3,27138E-120,001,47882E-430,007,09299E-260,006,93029E-1020,3 - - 1,64157E-140,00
0.2 SBToolbox28,34118E00,00-6,89666E-580,00-3,10335E-360,005,00000E10,00-3,19545E-580,00-1,00559E-250,00-3,08650E-270,001,59393E00,006,48916E-20,00-2,17058E-330,00-4,28119E-310,00-4,27655E-300,006,00000E10,00-7,73348E-380,008,01475E00,009,92725E-101,9-1,84594E-600,002,42968E-100,006,87245E-64,03,12888E-120,001,00000E30,003,26422E-10,00-1,49403E-450,00-2,71703E-370,001,00000E20,00-7,11069E-400,003,25908E-150,006,69740E-130,00-3,59222E-600,00-6,50439E-420,002,68892E-120,00-6,48911E-340,001,30365E-170,00
0.2 SBWOdeSolver8,34119E00,003,54937E-600,001,23801E-370,005,00000E10,001,05936E-600,001,79293E-250,001,56449E-270,001,59389E00,006,49020E-20,001,98936E-340,009,07274E-320,009,06846E-310,006,00000E10,003,09074E-390,008,01478E00,001,01230E-90,003,65181E-630,002,38434E-100,007,16176E-60,003,06624E-120,001,00000E30,003,26411E-10,002,55434E-470,002,48822E-380,001,00000E20,001,22167E-410,002,90378E-150,006,26062E-130,001,29000E-620,002,58589E-430,002,51313E-120,005,95910E-350,001,16158E-170,00
0.2 VCell8,34118E00,001,92729E-580,001,97866E-360,005,00000E10,006,36435E-590,001,78546E-250,002,53497E-270,001,59390E00,006,49010E-20,001,44169E-330,002,95317E-310,002,95006E-300,006,00000E10,004,93246E-380,008,01477E00,001,01190E-90,002,46827E-610,002,38324E-100,007,15952E-60,003,06483E-120,001,00000E30,003,26412E-10,008,51144E-460,001,80454E-370,001,00000E20,004,05694E-400,002,90252E-150,006,25761E-130,007,54212E-610,004,14453E-420,002,51193E-120,004,31069E-340,001,16108E-170,00
0.2 copasi8,34118E00,001,22519E-450,00-1,10494E-170,005,00000E10,004,33586E-460,00-5,91567E-150,001,55694E-270,001,59391E00,006,49000E-20,00-1,03212E-150,001,98079E-190,009,06626E-310,006,00000E10,001,87158E-140,008,01476E00,001,01167E-90,001,81793E-480,002,38211E-100,007,15870E-60,003,06780E-120,001,00000E30,003,26413E-10,004,30261E-330,002,94531E-250,001,00000E20,00-1,03379E-150,00-9,06626E-310,006,25234E-130,005,05052E-480,001,27120E-290,002,51005E-120,001,10494E-170,001,15971E-170,00
0.2 edu.kgi.roadRunner8,34118E00,00-1,00132E-460,007,87399E-180,005,00000E10,00-3,45388E-470,005,40679E-140,001,52809E-270,001,59391E00,006,49000E-20,002,21817E-150,00-6,00306E-200,008,79852E-310,006,00000E10,00-5,48525E-140,008,01476E00,001,01165E-90,00-1,40140E-490,002,38207E-100,007,15870E-60,003,02695E-120,001,00000E30,003,26413E-10,00-3,84374E-340,00-4,89999E-260,001,00000E20,002,21943E-150,00-8,79852E-310,006,25235E-130,00-3,99292E-490,00-1,45077E-300,002,49581E-120,00-7,87399E-180,001,14625E-170,00
0.2 jsim8,34118E00,003,30026E-430,006,02108E-290,005,00000E10,001,75516E-420,002,88841E-190,004,82738E-220,001,35958E014,72,98463E-13608,02796E-280,006,43884E-250,003,47338E-230,006,00000E10,006,43969E-290,006,83646E014,72,93262E-72,28E47,06918E-430,007,72036E-71,19E53,90769E-45,36E31,00201E-71001,00000E30,001,50471E03612,49977E-330,001,72393E-270,001,00000E20,001,07893E-310,008,24336E-111002,30272E-71001,30245E-430,002,14656E-300,005,76223E-100,005,16857E-260,001,65275E-9100
0.4 BioUML7,16854E00,003,16461E-520,006,60421E-320,005,00000E10,001,97223E-520,002,59503E-210,009,56820E-230,002,61462E00,002,16503E-10,005,17885E-290,001,14652E-260,001,14540E-250,006,00000E10,001,64639E-330,006,61957E00,004,10107E-80,001,38316E-540,001,96321E-80,001,67179E-40,002,60100E-100,001,00000E30,005,48973E-10,002,79510E-410,006,48168E-330,001,00000E20,001,33184E-350,001,03102E-120,001,07285E-100,002,35359E-540,001,38321E-370,004,32299E-100,001,54886E-290,004,12460E-150,00
0.4 ByoDyn7,16854E00,003,16460E-520,006,60421E-320,005,00000E10,001,97222E-520,002,59503E-210,009,56820E-230,002,61462E00,002,16503E-10,005,17885E-290,001,14652E-260,001,14540E-250,006,00000E10,001,64639E-330,006,61957E00,004,10107E-80,001,38315E-540,001,96321E-80,001,67179E-40,002,60100E-100,001,00000E30,005,48973E-10,002,79510E-410,006,48168E-330,001,00000E20,001,33184E-350,001,03102E-120,001,07285E-100,002,35358E-540,001,38320E-370,004,32299E-100,001,54886E-290,004,12460E-150,00
0.4 MathSBML7,16854E00,003,13430E-520,006,54661E-320,005,00000E10,001,98314E-520,002,59659E-210,009,59487E-230,002,61462E00,002,16503E-10,005,16989E-290,001,16039E-260,001,15928E-250,006,00000E10,001,63211E-330,006,61957E00,004,10103E-80,001,39750E-540,001,96313E-80,001,67179E-40,002,60088E-100,001,00000E30,005,48973E-10,002,72154E-410,006,47041E-330,001,00000E20,001,29696E-350,001,03086E-120,001,07274E-100,002,36666E-540,001,37101E-370,004,32254E-100,001,54621E-290,004,12396E-150,00
0.4 Oscill8 Core - - 1,46762E-380,00-2,32252E-120,005,00000E10,001,23354E-380,00 - - 4,53087E-210,002,61461E00,002,16505E-10,00-1,02534E-101001,01091E-150,003,81459E-230,006,00000E10,00 - - 6,61958E00,004,10326E-80,001,21230E-400,002,00779E-80,001,67209E-40,00 - - 1,00000E30,005,48970E-10,005,86177E-280,004,77252E-210,001,00000E20,00-1,02856E-10100 - - 1,18653E-100,001,31926E-400,006,06806E-250,009,37512E-100,00 - - 4,23058E-140,00
0.4 SBToolbox27,16821E00,00-5,08447E-530,001,14810E-310,005,00000E10,00-2,00188E-520,002,45128E-210,009,06780E-230,002,61505E00,002,16413E-10,007,02775E-290,001,26755E-260,001,26606E-250,006,00000E10,002,85934E-330,006,61909E00,004,09590E-80,12-3,04906E-540,002,02964E-80,001,65185E-41,22,69845E-100,001,00000E30,005,49066E-10,006,50630E-410,008,79882E-330,001,00000E20,003,09140E-350,001,23184E-120,001,17785E-100,00-2,13867E-540,002,40883E-370,004,74925E-100,002,09999E-290,004,92797E-150,00
0.4 SBWOdeSolver7,16855E00,003,18507E-520,006,63922E-320,005,00000E10,001,99264E-520,002,60075E-210,009,59880E-230,002,61461E00,002,16505E-10,005,20183E-290,001,15085E-260,001,14973E-250,006,00000E10,001,65511E-330,006,61958E00,004,10210E-80,001,40460E-540,001,96397E-80,001,67209E-40,002,60202E-100,001,00000E30,005,48970E-10,002,81314E-410,006,51044E-330,001,00000E20,001,34042E-350,001,03180E-120,001,07344E-100,002,37718E-540,001,39055E-370,004,32539E-100,001,55573E-290,004,12771E-150,00
0.4 VCell7,16854E00,003,20595E-520,006,62083E-320,005,00000E10,002,00317E-520,002,59539E-210,009,57029E-230,002,61462E00,002,16504E-10,005,18335E-290,001,14693E-260,001,14581E-250,006,00000E10,001,65051E-330,006,61957E00,004,10116E-80,001,40918E-540,001,96330E-80,001,67182E-40,002,60112E-100,001,00000E30,005,48972E-10,002,81524E-410,006,48733E-330,001,00000E20,001,34133E-350,001,03116E-120,001,07294E-100,002,38786E-540,001,38672E-370,004,32334E-100,001,55020E-290,004,12516E-150,00
0.4 copasi7,16854E00,004,47682E-420,00-2,40542E-170,005,00000E10,003,51778E-420,007,05729E-150,009,58230E-230,002,61462E00,002,16503E-10,00-1,76623E-150,008,94745E-190,001,15058E-250,006,00000E10,00-9,17301E-140,006,61957E00,004,10107E-80,003,10569E-440,001,96321E-80,001,67179E-40,002,60093E-100,001,00000E30,005,48973E-10,001,96717E-310,002,81481E-240,001,00000E20,00-1,76950E-15<