Test: BIOMD0000000095.xml - Ok

test: BIOMD0000000095.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000095.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: cP7m  cP7n  cLc  cP9m  cP9n  cYc  cXc  cP9c  cPn  cYm  cTn  cTm  ld  cXm  cXn  cP7c  cTc  cLm  cLn  cYn 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation cP7m cP7n cLc cP9m cP9n cYc cXc cP9c cPn cYm cTn cTm ld cXm cXn cP7c cTc cLm cLn cYn
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML4,28000E00,002,09100E00,006,78460E00,001,10060E00,003,75280E00,007,07500E00,001,30372E10,006,00910E00,000,00000E00,001,93700E-10,008,03980E00,003,71700E-10,000,00000E00,008,48700E00,003,18995E10,002,00554E10,001,72400E-10,008,53900E-10,006,81040E00,001,07000E00,00
0.0 ByoDyn4,28000E00,002,09100E00,006,78460E00,001,10060E00,003,75280E00,007,07500E00,001,30372E10,006,00910E00,000,00000E00,001,93700E-10,008,03980E00,003,71700E-10,000,00000E00,008,48700E00,003,18995E10,002,00554E10,001,72400E-10,008,53900E-10,006,81040E00,001,07000E00,00
0.0 MathSBML4,28000E00,002,09100E00,006,78460E00,001,10060E00,003,75280E00,007,07500E00,001,30372E10,006,00910E00,000,00000E00,001,93700E-10,008,03980E00,003,71700E-10,00 - - 8,48700E00,003,18995E10,002,00554E10,001,72400E-10,008,53900E-10,006,81040E00,001,07000E00,00
0.0 Oscill8 Core4,28000E00,002,09100E00,006,78460E00,001,10060E00,003,75280E00,007,07500E00,001,30372E10,006,00910E00,000,00000E00,001,93700E-10,008,03980E00,003,71700E-10,00 - - 8,48700E00,003,18995E10,002,00554E10,001,72400E-10,008,53900E-10,006,81040E00,001,07000E00,00
0.0 SBWOdeSolver4,28000E00,002,09100E00,006,78460E00,001,10060E00,003,75280E00,007,07500E00,001,30372E10,006,00910E00,000,00000E00,001,93700E-10,008,03980E00,003,71700E-10,00 - - 8,48700E00,003,18995E10,002,00554E10,001,72400E-10,008,53900E-10,006,81040E00,001,07000E00,00
0.0 copasi4,28000E00,002,09100E00,006,78460E00,001,10060E00,003,75280E00,007,07500E00,001,30372E10,006,00910E00,000,00000E00,001,93700E-10,008,03980E00,003,71700E-10,00 - - 8,48700E00,003,18995E10,002,00554E10,001,72400E-10,008,53900E-10,006,81040E00,001,07000E00,00
0.0 edu.kgi.roadRunner4,28000E00,002,09100E00,006,78460E00,001,10060E00,003,75280E00,007,07500E00,001,30372E10,006,00910E00,000,00000E00,001,93700E-10,008,03980E00,003,71700E-10,00 - - 8,48700E00,003,18995E10,002,00554E10,001,72400E-10,008,53900E-10,006,81040E00,001,07000E00,00
0.2 BioUML4,36524E00,002,15852E00,006,87842E00,001,13741E00,003,80117E00,006,85585E00,001,32325E10,006,08756E00,009,10680E-20,001,86509E-10,007,79802E00,003,51382E-10,000,00000E00,008,50184E00,003,23879E10,002,06987E10,001,61593E-10,008,49291E-10,006,91058E00,001,03683E00,00
0.2 ByoDyn4,36524E00,002,15852E00,006,87842E00,001,13741E00,003,80117E00,006,85585E00,001,32325E10,006,08756E00,009,10680E-20,001,86509E-10,007,79802E00,003,51382E-10,000,00000E00,008,50184E00,003,23879E10,002,06987E10,001,61593E-10,008,49291E-10,006,91058E00,001,03683E00,00
0.2 MathSBML4,36524E00,002,15852E00,006,87842E00,001,13741E00,003,80117E00,006,85585E00,001,32325E10,006,08756E00,009,10680E-20,001,86509E-10,007,79802E00,003,51382E-10,00 - - 8,50184E00,003,23879E10,002,06987E10,001,61593E-10,008,49291E-10,006,91058E00,001,03683E00,00
0.2 Oscill8 Core4,36524E00,002,15852E00,006,87842E00,001,13741E00,003,80117E00,006,85585E00,001,32325E10,006,08756E00,009,10677E-20,001,86509E-10,007,79802E00,003,51382E-10,00 - - 8,50184E00,003,23879E10,002,06987E10,001,61593E-10,008,49291E-10,006,91058E00,001,03683E00,00
0.2 SBWOdeSolver4,36524E00,002,15852E00,006,87842E00,001,13741E00,003,80117E00,006,85585E00,001,32325E10,006,08756E00,009,10677E-20,001,86509E-10,007,79802E00,003,51382E-10,00 - - 8,50184E00,003,23879E10,002,06987E10,001,61593E-10,008,49291E-10,006,91058E00,001,03683E00,00
0.2 copasi4,36524E00,002,15852E00,006,87842E00,001,13741E00,003,80117E00,006,85585E00,001,32325E10,006,08756E00,009,10680E-20,001,86509E-10,007,79802E00,003,51382E-10,00 - - 8,50184E00,003,23879E10,002,06987E10,001,61593E-10,008,49291E-10,006,91058E00,001,03683E00,00
0.2 edu.kgi.roadRunner4,36524E00,002,15852E00,006,87842E00,001,13741E00,003,80117E00,006,85585E00,001,32325E10,006,08756E00,009,10680E-20,001,86509E-10,007,79802E00,003,51382E-10,00 - - 8,50184E00,003,23879E10,002,06987E10,001,61593E-10,008,49291E-10,006,91058E00,001,03683E00,00
0.4 BioUML4,44728E00,002,22744E00,006,96241E00,001,17312E00,003,85207E00,006,64194E00,001,34210E10,006,16997E00,001,67608E-10,001,79690E-10,007,55581E00,003,32205E-10,000,00000E00,008,50910E00,003,28602E10,002,13554E10,001,55601E-10,008,43115E-10,007,00108E00,001,00444E00,00
0.4 ByoDyn4,44728E00,002,22744E00,006,96241E00,001,17312E00,003,85207E00,006,64194E00,001,34210E10,006,16997E00,001,67608E-10,001,79690E-10,007,55581E00,003,32205E-10,000,00000E00,008,50910E00,003,28602E10,002,13554E10,001,55601E-10,008,43115E-10,007,00108E00,001,00444E00,00
0.4 MathSBML4,44728E00,002,22744E00,006,96241E00,001,17312E00,003,85207E00,006,64194E00,001,34210E10,006,16997E00,001,67608E-10,001,79690E-10,007,55581E00,003,32205E-10,00 - - 8,50910E00,003,28602E10,002,13554E10,001,55601E-10,008,43115E-10,007,00108E00,001,00444E00,00
0.4 Oscill8 Core4,44728E00,002,22744E00,006,96241E00,001,17312E00,003,85207E00,006,64194E00,001,34210E10,006,16997E00,001,67607E-10,001,79690E-10,007,55581E00,003,32205E-10,00 - - 8,50910E00,003,28602E10,002,13554E10,001,55601E-10,008,43115E-10,007,00108E00,001,00444E00,00
0.4 SBWOdeSolver4,44728E00,002,22744E00,006,96241E00,001,17312E00,003,85207E00,006,64194E00,001,34210E10,006,16997E00,001,67607E-10,001,79690E-10,007,55581E00,003,32205E-10,00 - - 8,50910E00,003,28602E10,002,13554E10,001,55601E-10,008,43115E-10,007,00108E00,001,00444E00,00
0.4 copasi4,44728E00,002,22744E00,006,96241E00,001,17312E00,003,85207E00,006,64194E00,001,34210E10,006,16997E00,001,67608E-10,001,79690E-10,007,55581E00,003,32205E-10,00 - - 8,50910E00,003,28602E10,002,13554E10,001,55601E-10,008,43115E-10,007,00108E00,001,00444E00,00
0.4 edu.kgi.roadRunner4,44728E00,002,22744E00,006,96241E00,001,17312E00,003,85207E00,006,64194E00,001,34210E10,006,16997E00,001,67608E-10,001,79690E-10,007,55581E00,003,32205E-10,00 - - 8,50910E00,003,28602E10,002,13554E10,001,55601E-10,008,43115E-10,007,00108E00,001,00444E00,00
0.6 BioUML4,52599E00,002,29767E00,007,03605E00,001,20757E00,003,90538E00,006,43332E00,001,36016E10,006,25613E00,002,33184E-10,001,73239E-10,007,31763E00,003,14114E-10,000,00000E00,008,50825E00,003,33141E10,002,20241E10,001,49974E-10,008,35381E-10,007,08134E00,009,72861E-10,00
0.6 ByoDyn4,52599E00,002,29767E00,007,03605E00,001,20757E00,003,90538E00,006,43332E00,001,36016E10,006,25613E00,002,33184E-10,001,73239E-10,007,31763E00,003,14114E-10,000,00000E00,008,50825E00,003,33141E10,002,20241E10,001,49974E-10,008,35381E-10,007,08134E00,009,72861E-10,00
0.6 MathSBML4,52599E00,002,29767E00,007,03605E00,001,20757E00,003,90538E00,006,43332E00,001,36016E10,006,25613E00,002,33184E-10,001,73239E-10,007,31763E00,003,14114E-10,00 - - 8,50825E00,003,33141E10,002,20241E10,001,49974E-10,008,35381E-10,007,08134E00,009,72861E-10,00
0.6 Oscill8 Core4,52599E00,002,29767E00,007,03605E00,001,20757E00,003,90538E00,006,43332E00,001,36016E10,006,25613E00,002,33183E-10,001,73239E-10,007,31763E00,003,14114E-10,00 - - 8,50825E00,003,33141E10,002,20241E10,001,49974E-10,008,35381E-10,007,08134E00,009,72861E-10,00
0.6 SBWOdeSolver4,52599E00,002,29767E00,007,03605E00,001,20757E00,003,90538E00,006,43332E00,001,36016E10,006,25613E00,002,33183E-10,001,73239E-10,007,31763E00,003,14114E-10,00 - - 8,50825E00,003,33141E10,002,20241E10,001,49974E-10,008,35381E-10,007,08134E00,009,72861E-10,00
0.6 copasi4,52599E00,002,29767E00,007,03605E00,001,20757E00,003,90538E00,006,43332E00,001,36016E10,006,25613E00,002,33184E-10,001,73239E-10,007,31763E00,003,14114E-10,00 - - 8,50825E00,003,33141E10,002,20241E10,001,49974E-10,008,35381E-10,007,08134E00,009,72861E-10,00
0.6 edu.kgi.roadRunner4,52599E00,002,29767E00,007,03605E00,001,20757E00,003,90538E00,006,43332E00,001,36016E10,006,25613E00,002,33184E-10,001,73239E-10,007,31763E00,003,14114E-10,00 - - 8,50825E00,003,33141E10,002,20241E10,001,49974E-10,008,35381E-10,007,08134E00,009,72861E-10,00
0.8 BioUML4,60126E00,002,36909E00,007,09890E00,001,24061E00,003,96095E00,006,22999E00,001,37733E10,006,34582E00,002,90157E-10,001,67155E-10,007,08384E00,002,97054E-10,000,00000E00,008,49884E00,003,37470E10,002,27039E10,001,44523E-10,008,26104E-10,007,15086E00,009,42080E-10,00
0.8 ByoDyn4,60126E00,002,36909E00,007,09890E00,001,24061E00,003,96095E00,006,22999E00,001,37733E10,006,34582E00,002,90157E-10,001,67155E-10,007,08384E00,002,97054E-10,000,00000E00,008,49884E00,003,37470E10,002,27039E10,001,44523E-10,008,26104E-10,007,15086E00,009,42080E-10,00
0.8 MathSBML4,60126E00,002,36909E00,007,09890E00,001,24061E00,003,96095E00,006,22999E00,001,37733E10,006,34582E00,002,90157E-10,001,67155E-10,007,08384E00,002,97054E-10,00 - - 8,49884E00,003,37470E10,002,27039E10,001,44523E-10,008,26104E-10,007,15086E00,009,42080E-10,00
0.8 Oscill8 Core4,60125E00,002,36909E00,007,09890E00,001,24061E00,003,96095E00,006,22999E00,001,37733E10,006,34582E00,002,90157E-10,001,67155E-10,007,08384E00,002,97054E-10,00 - - 8,49884E00,003,37470E10,002,27039E10,001,44523E-10,008,26104E-10,007,15086E00,009,42080E-10,00
0.8 SBWOdeSolver4,60125E00,002,36909E00,007,09890E00,001,24061E00,003,96095E00,006,22999E00,001,37733E10,006,34582E00,002,90157E-10,001,67155E-10,007,08384E00,002,97054E-10,00 - - 8,49884E00,003,37470E10,002,27039E10,001,44523E-10,008,26104E-10,007,15086E00,009,42080E-10,00
0.8 copasi4,60126E00,002,36909E00,007,09890E00,001,24061E00,003,96095E00,006,22999E00,001,37733E10,006,34582E00,002,90157E-10,001,67155E-10,007,08384E00,002,97054E-10,00 - - 8,49884E00,003,37470E10,002,27039E10,001,44523E-10,008,26104E-10,007,15086E00,009,42080E-10,00
0.8 edu.kgi.roadRunner4,60126E00,002,36909E00,007,09890E00,001,24061E00,003,96095E00,006,22999E00,001,37733E10,006,34582E00,002,90157E-10,001,67155E-10,007,08384E00,002,97054E-10,00 - - 8,49884E00,003,37470E10,002,27039E10,001,44523E-10,008,26104E-10,007,15086E00,009,42080E-10,00
1.0 BioUML4,67295E00,002,44159E00,007,15050E00,001,27207E00,004,01864E00,006,03198E00,001,39350E10,006,43881E00,003,40187E-10,001,61438E-10,006,85463E00,002,80976E-10,000,00000E00,008,48042E00,003,41563E10,002,33935E10,001,39240E-10,008,15314E-10,007,20918E00,009,12104E-10,00
1.0 ByoDyn4,67295E00,002,44159E00,007,15050E00,001,27207E00,004,01864E00,006,03198E00,001,39350E10,006,43881E00,003,40187E-10,001,61438E-10,006,85463E00,002,80976E-10,000,00000E00,008,48042E00,003,41563E10,002,33935E10,001,39240E-10,008,15314E-10,007,20918E00,009,12104E-10,00
1.0 MathSBML4,67295E00,002,44159E00,007,15050E00,001,27207E00,004,01864E00,006,03198E00,001,39350E10,006,43881E00,003,40187E-10,001,61438E-10,006,85463E00,002,80976E-10,00 - - 8,48042E00,003,41563E10,002,33935E10,001,39240E-10,008,15314E-10,007,20918E00,009,12104E-10,00
1.0 Oscill8 Core4,67295E00,002,44159E00,007,15050E00,001,27207E00,004,01864E00,006,03198E00,001,39350E10,006,43881E00,003,40186E-10,001,61438E-10,006,85463E00,002,80976E-10,00 - - 8,48042E00,003,41563E10,002,33935E10,001,39240E-10,008,15314E-10,007,20918E00,009,12104E-10,00
1.0 SBWOdeSolver4,67295E00,002,44159E00,007,15050E00,001,27207E00,004,01864E00,006,03198E00,001,39350E10,006,43881E00,003,40186E-10,001,61438E-10,006,85463E00,002,80976E-10,00 - - 8,48042E00,003,41563E10,002,33935E10,001,39240E-10,008,15314E-10,007,20918E00,009,12104E-10,00
1.0 copasi4,67295E00,002,44159E00,007,15050E00,001,27207E00,004,01864E00,006,03198E00,001,39350E10,006,43881E00,003,40186E-10,001,61438E-10,006,85463E00,002,80976E-10,00 - - 8,48042E00,003,41563E10,002,33935E10,001,39240E-10,008,15314E-10,007,20918E00,009,12104E-10,00
1.0 edu.kgi.roadRunner4,67295E00,002,44159E00,007,15050E00,001,27207E00,004,01864E00,006,03198E00,001,39350E10,006,43881E00,003,40187E-10,001,61438E-10,006,85463E00,002,80976E-10,00 - - 8,48042E00,003,41563E10,002,33935E10,001,39240E-10,008,15314E-10,007,20918E00,009,12104E-10,00
1.2 BioUML4,74096E00,002,51504E00,007,19047E00,001,30181E00,004,07829E00,005,83930E00,001,40855E10,006,53484E00,003,84487E-10,001,56088E-10,006,63014E00,002,65829E-10,000,00000E00,008,45256E00,003,45391E10,002,40918E10,001,34122E-10,008,03052E-10,007,25588E00,008,82934E-10,00
1.2 ByoDyn4,74096E00,002,51504E00,007,19047E00,001,30181E00,004,07829E00,005,83930E00,001,40855E10,006,53484E00,003,84487E-10,001,56088E-10,006,63014E00,002,65829E-10,000,00000E00,008,45256E00,003,45391E10,002,40918E10,001,34122E-10,008,03052E-10,007,25588E00,008,82934E-10,00
1.2 MathSBML4,74096E00,002,51504E00,007,19047E00,001,30181E00,004,07829E00,005,83930E00,001,40855E10,006,53484E00,003,84487E-10,001,56088E-10,006,63014E00,002,65829E-10,00 - - 8,45256E00,003,45391E10,002,40918E10,001,34122E-10,008,03052E-10,007,25588E00,008,82934E-10,00
1.2 Oscill8 Core4,74096E00,002,51504E00,007,19047E00,001,30180E00,004,07829E00,005,83930E00,001,40855E10,006,53484E00,003,84486E-10,001,56089E-10,006,63014E00,002,65829E-10,00 - - 8,45256E00,003,45391E10,002,40918E10,001,34122E-10,008,03052E-10,007,25588E00,008,82934E-10,00
1.2 SBWOdeSolver4,74096E00,002,51504E00,007,19047E00,001,30180E00,004,07829E00,005,83930E00,001,40855E10,006,53484E00,003,84486E-10,001,56089E-10,006,63014E00,002,65829E-10,00 - - 8,45256E00,003,45391E10,002,40918E10,001,34122E-10,008,03052E-10,007,25588E00,008,82934E-10,00
1.2 copasi4,74096E00,002,51504E00,007,19047E00,001,30181E00,004,07829E00,005,83930E00,001,40855E10,006,53484E00,003,84486E-10,001,56088E-10,006,63014E00,002,65829E-10,00 - - 8,45256E00,003,45391E10,002,40918E10,001,34122E-10,008,03052E-10,007,25588E00,008,82934E-10,00
1.2 edu.kgi.roadRunner4,74096E00,002,51504E00,007,19047E00,001,30181E00,004,07829E00,005,83930E00,001,40855E10,006,53484E00,003,84487E-10,001,56088E-10,006,63014E00,002,65829E-10,00 - - 8,45256E00,003,45391E10,002,40918E10,001,34122E-10,008,03052E-10,007,25588E00,008,82934E-10,00
1.4 BioUML4,80517E00,002,58932E00,007,21848E00,001,32966E00,004,13973E00,005,65196E00,001,42236E10,006,63363E00,004,23980E-10,001,51112E-10,006,41048E00,002,51566E-10,000,00000E00,008,41490E00,003,48927E10,002,47976E10,001,29166E-10,007,89374E-10,007,29059E00,008,54574E-10,00
1.4 ByoDyn4,80517E00,002,58932E00,007,21848E00,001,32966E00,004,13973E00,005,65196E00,001,42236E10,006,63363E00,004,23980E-10,001,51112E-10,006,41048E00,002,51566E-10,000,00000E00,008,41490E00,003,48927E10,002,47976E10,001,29166E-10,007,89374E-10,007,29059E00,008,54574E-10,00
1.4 MathSBML4,80517E00,002,58932E00,007,21848E00,001,32966E00,004,13973E00,005,65196E00,001,42236E10,006,63363E00,004,23980E-10,001,51112E-10,006,41048E00,002,51566E-10,00 - - 8,41490E00,003,48927E10,002,47976E10,001,29166E-10,007,89374E-10,007,29059E00,008,54574E-10,00
1.4 Oscill8 Core4,80517E00,002,58932E00,007,21848E00,001,32966E00,004,13973E00,005,65196E00,001,42236E10,006,63363E00,004,23979E-10,001,51112E-10,006,41048E00,002,51567E-10,00 - - 8,41490E00,003,48926E10,002,47976E10,001,29166E-10,007,89374E-10,007,29059E00,008,54574E-10,00
1.4 SBWOdeSolver4,80517E00,002,58932E00,007,21848E00,001,32966E00,004,13973E00,005,65196E00,001,42236E10,006,63363E00,004,23979E-10,001,51112E-10,006,41048E00,002,51567E-10,00 - - 8,41490E00,003,48926E10,002,47976E10,001,29166E-10,007,89374E-10,007,29059E00,008,54574E-10,00
1.4 copasi4,80517E00,002,58932E00,007,21848E00,001,32966E00,004,13973E00,005,65196E00,001,42236E10,006,63363E00,004,23979E-10,001,51112E-10,006,41048E00,002,51566E-10,00 - - 8,41490E00,003,48927E10,002,47976E10,001,29166E-10,007,89374E-10,007,29059E00,008,54574E-10,00
1.4 edu.kgi.roadRunner4,80517E00,002,58932E00,007,21848E00,001,32966E00,004,13973E00,005,65196E00,001,42236E10,006,63363E00,004,23980E-10,001,51112E-10,006,41048E00,002,51566E-10,00 - - 8,41490E00,003,48927E10,002,47976E10,001,29166E-10,007,89374E-10,007,29059E00,008,54574E-10,00
1.6 BioUML4,86545E00,002,66430E00,007,23426E00,001,35549E00,004,20278E00,005,46998E00,001,43482E10,006,73489E00,004,59383E-10,001,46517E-10,00