Test: BIOMD0000000096.xml - Ok

test: BIOMD0000000096.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000096.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4025634026.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: cP7m  cP7n  cLc  Day_in_hours  cP9m  cP9n  cYc  cXc  cP9c  cPn  cYm  cTn  ld  cTm  cXm  cXn  cP7c  cTc  cLm  cLn  cYn 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation cP7m cP7n cLc Day_in_hours cP9m cP9n cYc cXc cP9c cPn cYm cTn ld cTm cXm cXn cP7c cTc cLm cLn cYn
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML2,04000E-20,001,51030E00,007,31000E-20,002,40000E10,002,00000E-30,001,11620E00,004,92611E10,002,41880E00,007,34000E-10,000,00000E00,002,99200E-10,004,53330E00,001,00000E00,003,67320E00,006,52000E-10,001,47289E10,002,66000E-20,005,22350E00,001,11400E-10,002,36600E-10,001,74355E10,00
0.0 ByoDyn2,04000E-20,001,51030E00,007,31000E-20,002,40000E10,002,00000E-30,001,11620E00,004,92611E10,002,41880E00,007,34000E-10,000,00000E00,002,99200E-10,004,53330E00,001,00000E00,003,67320E00,006,52000E-10,001,47289E10,002,66000E-20,005,22350E00,001,11400E-10,002,36600E-10,001,74355E10,00
0.0 MathSBML2,04000E-20,001,51030E00,007,31000E-20,00 - - 2,00000E-30,001,11620E00,004,92611E10,002,41880E00,007,34000E-10,000,00000E00,002,99200E-10,004,53330E00,00 - - 3,67320E00,006,52000E-10,001,47289E10,002,66000E-20,005,22350E00,001,11400E-10,002,36600E-10,001,74355E10,00
0.0 Oscill8 Core2,04000E-20,001,51030E00,007,31000E-20,00 - - 2,00000E-30,001,11620E00,004,92611E10,002,41880E00,007,34000E-10,000,00000E00,002,99200E-10,004,53330E00,00 - - 3,67320E00,006,52000E-10,001,47289E10,002,66000E-20,005,22350E00,001,11400E-10,002,36600E-10,001,74355E10,00
0.0 SBWOdeSolver2,04000E-20,001,51030E00,007,31000E-20,00 - - 2,00000E-30,001,11620E00,004,92611E10,002,41880E00,007,34000E-10,000,00000E00,002,99200E-10,004,53330E00,00 - - 3,67320E00,006,52000E-10,001,47289E10,002,66000E-20,005,22350E00,001,11400E-10,002,36600E-10,001,74355E10,00
0.0 copasi2,04000E-20,001,51030E00,007,31000E-20,00 - - 2,00000E-30,001,11620E00,004,92611E10,002,41880E00,007,34000E-10,000,00000E00,002,99200E-10,004,53330E00,00 - - 3,67320E00,006,52000E-10,001,47289E10,002,66000E-20,005,22350E00,001,11400E-10,002,36600E-10,001,74355E10,00
0.0 edu.kgi.roadRunner2,04000E-20,001,51030E00,007,31000E-20,00 - - 2,00000E-30,001,11620E00,004,92611E10,002,41880E00,007,34000E-10,000,00000E00,002,99200E-10,004,53330E00,00 - - 3,67320E00,006,52000E-10,001,47289E10,002,66000E-20,005,22350E00,001,11400E-10,002,36600E-10,001,74355E10,00
0.2 BioUML1,97114E-20,001,47854E00,007,28525E-20,002,40000E10,001,88156E-30,001,10082E00,004,91937E10,002,42475E00,007,23868E-10,000,00000E00,002,98582E-10,004,53209E00,001,00000E00,003,66342E00,006,53008E-10,001,47659E10,002,60216E-20,005,22198E00,001,15366E-10,002,39318E-10,001,74117E10,00
0.2 ByoDyn1,97114E-20,001,47854E00,007,28525E-20,002,40000E10,001,88156E-30,001,10082E00,004,91937E10,002,42475E00,007,23868E-10,000,00000E00,002,98582E-10,004,53209E00,001,00000E00,003,66342E00,006,53008E-10,001,47659E10,002,60216E-20,005,22198E00,001,15366E-10,002,39318E-10,001,74117E10,00
0.2 MathSBML1,97114E-20,001,47854E00,007,28525E-20,00 - - 1,88156E-30,001,10082E00,004,91937E10,002,42475E00,007,23868E-10,000,00000E00,002,98582E-10,004,53209E00,00 - - 3,66342E00,006,53008E-10,001,47659E10,002,60216E-20,005,22198E00,001,15366E-10,002,39318E-10,001,74117E10,00
0.2 Oscill8 Core1,97114E-20,001,47854E00,007,28525E-20,00 - - 1,88156E-30,001,10082E00,004,91937E10,002,42475E00,007,23868E-10,000,00000E00,002,98582E-10,004,53209E00,00 - - 3,66342E00,006,53008E-10,001,47659E10,002,60216E-20,005,22198E00,001,15366E-10,002,39318E-10,001,74117E10,00
0.2 SBWOdeSolver1,97114E-20,001,47854E00,007,28525E-20,00 - - 1,88156E-30,001,10082E00,004,91937E10,002,42475E00,007,23868E-10,000,00000E00,002,98582E-10,004,53209E00,00 - - 3,66342E00,006,53008E-10,001,47659E10,002,60216E-20,005,22198E00,001,15366E-10,002,39318E-10,001,74117E10,00
0.2 copasi1,97114E-20,001,47854E00,007,28525E-20,00 - - 1,88156E-30,001,10082E00,004,91937E10,002,42475E00,007,23868E-10,000,00000E00,002,98582E-10,004,53209E00,00 - - 3,66342E00,006,53008E-10,001,47659E10,002,60216E-20,005,22198E00,001,15366E-10,002,39318E-10,001,74117E10,00
0.2 edu.kgi.roadRunner1,97114E-20,001,47854E00,007,28525E-20,00 - - 1,88156E-30,001,10082E00,004,91937E10,002,42475E00,007,23868E-10,000,00000E00,002,98582E-10,004,53209E00,00 - - 3,66342E00,006,53008E-10,001,47659E10,002,60216E-20,005,22198E00,001,15366E-10,002,39318E-10,001,74117E10,00
0.4 BioUML1,90495E-20,001,44711E00,007,36815E-20,002,40000E10,001,77093E-30,001,08554E00,004,91257E10,002,43067E00,007,13799E-10,000,00000E00,002,98038E-10,004,53003E00,001,00000E00,003,65317E00,006,53954E-10,001,48031E10,002,54162E-20,005,21946E00,001,19638E-10,002,41740E-10,001,73877E10,00
0.4 ByoDyn1,90495E-20,001,44711E00,007,36815E-20,002,40000E10,001,77093E-30,001,08554E00,004,91257E10,002,43067E00,007,13799E-10,000,00000E00,002,98038E-10,004,53003E00,001,00000E00,003,65317E00,006,53954E-10,001,48031E10,002,54162E-20,005,21946E00,001,19638E-10,002,41740E-10,001,73877E10,00
0.4 MathSBML1,90495E-20,001,44711E00,007,36815E-20,00 - - 1,77093E-30,001,08554E00,004,91257E10,002,43067E00,007,13799E-10,000,00000E00,002,98038E-10,004,53003E00,00 - - 3,65317E00,006,53954E-10,001,48031E10,002,54162E-20,005,21946E00,001,19638E-10,002,41740E-10,001,73877E10,00
0.4 Oscill8 Core1,90495E-20,001,44711E00,007,36815E-20,00 - - 1,77093E-30,001,08554E00,004,91257E10,002,43067E00,007,13799E-10,000,00000E00,002,98038E-10,004,53003E00,00 - - 3,65317E00,006,53954E-10,001,48031E10,002,54162E-20,005,21946E00,001,19638E-10,002,41740E-10,001,73877E10,00
0.4 SBWOdeSolver1,90495E-20,001,44711E00,007,36815E-20,00 - - 1,77093E-30,001,08554E00,004,91257E10,002,43067E00,007,13799E-10,000,00000E00,002,98038E-10,004,53003E00,00 - - 3,65317E00,006,53954E-10,001,48031E10,002,54162E-20,005,21946E00,001,19638E-10,002,41740E-10,001,73877E10,00
0.4 copasi1,90495E-20,001,44711E00,007,36815E-20,00 - - 1,77093E-30,001,08554E00,004,91257E10,002,43067E00,007,13799E-10,000,00000E00,002,98038E-10,004,53003E00,00 - - 3,65317E00,006,53954E-10,001,48031E10,002,54162E-20,005,21946E00,001,19638E-10,002,41740E-10,001,73877E10,00
0.4 edu.kgi.roadRunner1,90495E-20,001,44711E00,007,36815E-20,00 - - 1,77093E-30,001,08554E00,004,91257E10,002,43067E00,007,13799E-10,000,00000E00,002,98038E-10,004,53003E00,00 - - 3,65317E00,006,53954E-10,001,48031E10,002,54162E-20,005,21946E00,001,19638E-10,002,41740E-10,001,73877E10,00
0.6 BioUML1,84137E-20,001,41600E00,007,46969E-20,002,40000E10,001,66769E-30,001,07035E00,004,90570E10,002,43656E00,007,03797E-10,000,00000E00,002,97569E-10,004,52710E00,001,00000E00,003,64250E00,006,54837E-10,001,48402E10,002,48209E-20,005,21595E00,001,24230E-10,002,44771E-10,001,73634E10,00
0.6 ByoDyn1,84137E-20,001,41600E00,007,46969E-20,002,40000E10,001,66769E-30,001,07035E00,004,90570E10,002,43656E00,007,03797E-10,000,00000E00,002,97569E-10,004,52710E00,001,00000E00,003,64250E00,006,54837E-10,001,48402E10,002,48209E-20,005,21595E00,001,24230E-10,002,44771E-10,001,73634E10,00
0.6 MathSBML1,84137E-20,001,41600E00,007,46969E-20,00 - - 1,66769E-30,001,07035E00,004,90570E10,002,43656E00,007,03797E-10,000,00000E00,002,97569E-10,004,52710E00,00 - - 3,64250E00,006,54837E-10,001,48402E10,002,48209E-20,005,21595E00,001,24230E-10,002,44771E-10,001,73634E10,00
0.6 Oscill8 Core1,84137E-20,001,41600E00,007,46969E-20,00 - - 1,66769E-30,001,07035E00,004,90570E10,002,43656E00,007,03797E-10,000,00000E00,002,97569E-10,004,52710E00,00 - - 3,64250E00,006,54837E-10,001,48402E10,002,48209E-20,005,21595E00,001,24230E-10,002,44771E-10,001,73634E10,00
0.6 SBWOdeSolver1,84137E-20,001,41600E00,007,46969E-20,00 - - 1,66769E-30,001,07035E00,004,90570E10,002,43656E00,007,03797E-10,000,00000E00,002,97569E-10,004,52710E00,00 - - 3,64250E00,006,54837E-10,001,48402E10,002,48209E-20,005,21595E00,001,24230E-10,002,44771E-10,001,73634E10,00
0.6 copasi1,84137E-20,001,41600E00,007,46969E-20,00 - - 1,66768E-30,001,07035E00,004,90570E10,002,43656E00,007,03797E-10,000,00000E00,002,97569E-10,004,52710E00,00 - - 3,64250E00,006,54837E-10,001,48402E10,002,48209E-20,005,21595E00,001,24230E-10,002,44771E-10,001,73634E10,00
0.6 edu.kgi.roadRunner1,84137E-20,001,41600E00,007,46969E-20,00 - - 1,66769E-30,001,07035E00,004,90570E10,002,43656E00,007,03797E-10,000,00000E00,002,97569E-10,004,52710E00,00 - - 3,64250E00,006,54837E-10,001,48402E10,002,48209E-20,005,21595E00,001,24230E-10,002,44771E-10,001,73634E10,00
0.8 BioUML1,78035E-20,001,38523E00,007,59021E-20,002,40000E10,001,57146E-30,001,05527E00,004,89880E10,002,44243E00,006,93867E-10,000,00000E00,002,97175E-10,004,52334E00,001,00000E00,003,63144E00,006,55656E-10,001,48773E10,002,42362E-20,005,21148E00,001,29153E-10,002,48421E-10,001,73390E10,00
0.8 ByoDyn1,78035E-20,001,38523E00,007,59021E-20,002,40000E10,001,57146E-30,001,05527E00,004,89880E10,002,44243E00,006,93867E-10,000,00000E00,002,97175E-10,004,52334E00,001,00000E00,003,63144E00,006,55656E-10,001,48773E10,002,42362E-20,005,21148E00,001,29153E-10,002,48421E-10,001,73390E10,00
0.8 MathSBML1,78035E-20,001,38523E00,007,59021E-20,00 - - 1,57146E-30,001,05527E00,004,89880E10,002,44243E00,006,93867E-10,000,00000E00,002,97175E-10,004,52334E00,00 - - 3,63144E00,006,55656E-10,001,48773E10,002,42362E-20,005,21148E00,001,29153E-10,002,48421E-10,001,73390E10,00
0.8 Oscill8 Core1,78035E-20,001,38523E00,007,59021E-20,00 - - 1,57146E-30,001,05527E00,004,89880E10,002,44243E00,006,93867E-10,000,00000E00,002,97175E-10,004,52334E00,00 - - 3,63144E00,006,55656E-10,001,48773E10,002,42363E-20,005,21148E00,001,29154E-10,002,48421E-10,001,73390E10,00
0.8 SBWOdeSolver1,78035E-20,001,38523E00,007,59021E-20,00 - - 1,57146E-30,001,05527E00,004,89880E10,002,44243E00,006,93867E-10,000,00000E00,002,97175E-10,004,52334E00,00 - - 3,63144E00,006,55656E-10,001,48773E10,002,42363E-20,005,21148E00,001,29154E-10,002,48421E-10,001,73390E10,00
0.8 copasi1,78035E-20,001,38523E00,007,59021E-20,00 - - 1,57146E-30,001,05527E00,004,89880E10,002,44243E00,006,93867E-10,000,00000E00,002,97175E-10,004,52334E00,00 - - 3,63144E00,006,55656E-10,001,48773E10,002,42363E-20,005,21148E00,001,29154E-10,002,48422E-10,001,73390E10,00
0.8 edu.kgi.roadRunner1,78035E-20,001,38523E00,007,59021E-20,00 - - 1,57146E-30,001,05527E00,004,89880E10,002,44243E00,006,93867E-10,000,00000E00,002,97175E-10,004,52334E00,00 - - 3,63144E00,006,55656E-10,001,48773E10,002,42362E-20,005,21148E00,001,29153E-10,002,48421E-10,001,73390E10,00
1.0 BioUML1,72185E-20,001,35483E00,007,73013E-20,002,40000E10,001,48190E-30,001,04031E00,004,89187E10,002,44826E00,006,84014E-10,000,00000E00,002,96856E-10,004,51875E00,001,00000E00,003,62000E00,006,56407E-10,001,49143E10,002,36623E-20,005,20605E00,001,34423E-10,002,52706E-10,001,73144E10,00
1.0 ByoDyn1,72185E-20,001,35483E00,007,73013E-20,002,40000E10,001,48190E-30,001,04031E00,004,89187E10,002,44826E00,006,84014E-10,000,00000E00,002,96856E-10,004,51875E00,001,00000E00,003,62000E00,006,56407E-10,001,49143E10,002,36623E-20,005,20605E00,001,34423E-10,002,52706E-10,001,73144E10,00
1.0 MathSBML1,72185E-20,001,35483E00,007,73013E-20,00 - - 1,48190E-30,001,04031E00,004,89187E10,002,44826E00,006,84014E-10,000,00000E00,002,96856E-10,004,51875E00,00 - - 3,62000E00,006,56407E-10,001,49143E10,002,36623E-20,005,20605E00,001,34423E-10,002,52706E-10,001,73144E10,00
1.0 Oscill8 Core1,72185E-20,001,35483E00,007,73014E-20,00 - - 1,48190E-30,001,04031E00,004,89187E10,002,44826E00,006,84014E-10,000,00000E00,002,96856E-10,004,51875E00,00 - - 3,62000E00,006,56407E-10,001,49143E10,002,36623E-20,005,20605E00,001,34423E-10,002,52706E-10,001,73144E10,00
1.0 SBWOdeSolver1,72185E-20,001,35483E00,007,73014E-20,00 - - 1,48190E-30,001,04031E00,004,89187E10,002,44826E00,006,84014E-10,000,00000E00,002,96856E-10,004,51875E00,00 - - 3,62000E00,006,56407E-10,001,49143E10,002,36623E-20,005,20605E00,001,34423E-10,002,52706E-10,001,73144E10,00
1.0 copasi1,72185E-20,001,35483E00,007,73014E-20,00 - - 1,48190E-30,001,04031E00,004,89187E10,002,44826E00,006,84014E-10,000,00000E00,002,96856E-10,004,51875E00,00 - - 3,62000E00,006,56407E-10,001,49143E10,002,36623E-20,005,20605E00,001,34423E-10,002,52706E-10,001,73144E10,00
1.0 edu.kgi.roadRunner1,72185E-20,001,35483E00,007,73013E-20,00 - - 1,48190E-30,001,04031E00,004,89187E10,002,44826E00,006,84014E-10,000,00000E00,002,96856E-10,004,51875E00,00 - - 3,62000E00,006,56407E-10,001,49143E10,002,36623E-20,005,20605E00,001,34423E-10,002,52706E-10,001,73144E10,00
1.2 BioUML1,66582E-20,001,32480E00,007,88992E-20,002,40000E10,001,39871E-30,001,02547E00,004,88493E10,002,45403E00,006,74242E-10,000,00000E00,002,96613E-10,004,51336E00,001,00000E00,003,60823E00,006,57091E-10,001,49509E10,002,30993E-20,005,19970E00,001,40053E-10,002,57638E-10,001,72898E10,00
1.2 ByoDyn1,66582E-20,001,32480E00,007,88992E-20,002,40000E10,001,39871E-30,001,02547E00,004,88493E10,002,45403E00,006,74242E-10,000,00000E00,002,96613E-10,004,51336E00,001,00000E00,003,60823E00,006,57091E-10,001,49509E10,002,30993E-20,005,19970E00,001,40053E-10,002,57638E-10,001,72898E10,00
1.2 MathSBML1,66582E-20,001,32480E00,007,88992E-20,00 - - 1,39871E-30,001,02547E00,004,88493E10,002,45403E00,006,74242E-10,000,00000E00,002,96613E-10,004,51336E00,00 - - 3,60823E00,006,57091E-10,001,49509E10,002,30993E-20,005,19970E00,001,40053E-10,002,57638E-10,001,72898E10,00
1.2 Oscill8 Core1,66582E-20,001,32480E00,007,88992E-20,00 - - 1,39871E-30,001,02547E00,004,88493E10,002,45403E00,006,74242E-10,000,00000E00,002,96613E-10,004,51336E00,00 - - 3,60823E00,006,57091E-10,001,49509E10,002,30993E-20,005,19970E00,001,40053E-10,002,57638E-10,001,72898E10,00
1.2 SBWOdeSolver1,66582E-20,001,32480E00,007,88992E-20,00 - - 1,39871E-30,001,02547E00,004,88493E10,002,45403E00,006,74242E-10,000,00000E00,002,96613E-10,004,51336E00,00 - - 3,60823E00,006,57091E-10,001,49509E10,002,30993E-20,005,19970E00,001,40053E-10,002,57638E-10,001,72898E10,00
1.2 copasi1,66582E-20,001,32480E00,007,88992E-20,00 - - 1,39871E-30,001,02547E00,004,88493E10,002,45403E00,006,74242E-10,000,00000E00,002,96613E-10,004,51336E00,00 - - 3,60823E00,006,57091E-10,001,49509E10,002,30993E-20,005,19971E00,001,40053E-10,002,57638E-10,001,72898E10,00
1.2 edu.kgi.roadRunner1,66582E-20,001,32480E00,007,88992E-20,00 - - 1,39871E-30,001,02547E00,004,88493E10,002,45403E00,006,74242E-10,000,00000E00,002,96613E-10,004,51336E00,00 - - 3,60823E00,006,57091E-10,001,49509E10,002,30993E-20,005,19970E00,001,40053E-10,002,57638E-10,001,72898E10,00
1.4 BioUML1,61223E-20,001,29519E00,008,07008E-20,002,40000E10,001,32160E-30,001,01075E00,004,87800E10,002,45973E00,006,64555E-10,000,00000E00,002,96445E-10,004,50717E00,001,00000E00,003,59617E00,006,57705E-10,001,49872E10,002,25475E-20,005,19245E00,001,46059E-10,002,63234E-10,001,72653E10,00
1.4 ByoDyn1,61223E-20,001,29519E00,008,07008E-20,002,40000E10,001,32160E-30,001,01075E00,004,87800E10,002,45973E00,006,64555E-10,000,00000E00,002,96445E-10,004,50717E00,001,00000E00,003,59617E00,006,57705E-10,001,49872E10,002,25475E-20,005,19245E00,001,46059E-10,002,63234E-10,001,72653E10,00
1.4 MathSBML1,61223E-20,001,29519E00,008,07008E-20,00 - - 1,32160E-30,001,01075E00,004,87800E10,002,45973E00,006,64555E-10,000,00000E00,002,96445E-10,004,50717E00,00 - - 3,59617E00,006,57705E-10,001,49872E10,002,25475E-20,005,19245E00,001,46059E-10,002,63234E-10,001,72653E10,00
1.4 Oscill8 Core1,61223E-20,001,29519E00,008,07008E-20,00 - - 1,32160E-30,001,01075E00,004,87800E10,002,45973E00,006,64555E-10,000,00000E00,002,96445E-10,004,50717E00,00 - - 3,59617E00,006,57705E-10,001,49872E10,002,25475E-20,005,19245E00,001,46059E-10,002,63234E-10,001,72653E10,00
1.4 SBWOdeSolver1,61223E-20,001,29519E00,008,07008E-20,00 - - 1,32160E-30,001,01075E00,004,87800E10,002,45973E00,00