Test: BIOMD0000000097.xml - Ok

test: BIOMD0000000097.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000097.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4025650992.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: cP7m  cP7n  cLc  Day_in_hours  cP9m  cP9n  cYc  cXc  cP9c  cPn  cYm  cTn  ld  cTm  cXm  cXn  cP7c  cTc  cLm  cLn  cYn 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation cP7m cP7n cLc Day_in_hours cP9m cP9n cYc cXc cP9c cPn cYm cTn ld cTm cXm cXn cP7c cTc cLm cLn cYn
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML7,72000E-20,002,71820E00,006,59000E-20,002,40000E10,001,10000E-30,007,30000E-30,007,67950E00,002,56150E00,007,70000E-30,000,00000E00,001,11490E00,004,52090E00,001,00000E00,001,23400E-10,001,61040E00,001,45474E10,008,61000E-20,007,85200E-10,001,95100E-10,003,95200E-10,009,70160E00,00
0.0 ByoDyn7,72000E-20,002,71820E00,006,59000E-20,002,40000E10,001,10000E-30,007,30000E-30,007,67950E00,002,56150E00,007,70000E-30,000,00000E00,001,11490E00,004,52090E00,001,00000E00,001,23400E-10,001,61040E00,001,45474E10,008,61000E-20,007,85200E-10,001,95100E-10,003,95200E-10,009,70160E00,00
0.0 MathSBML7,72000E-20,002,71820E00,006,59000E-20,00 - - 1,10000E-30,007,30000E-30,007,67950E00,002,56150E00,007,70000E-30,000,00000E00,001,11490E00,004,52090E00,00 - - 1,23400E-10,001,61040E00,001,45474E10,008,61000E-20,007,85200E-10,001,95100E-10,003,95200E-10,009,70160E00,00
0.0 Oscill8 Core7,72000E-20,002,71820E00,006,59000E-20,00 - - 1,10000E-30,007,30000E-30,007,67950E00,002,56150E00,007,70000E-30,000,00000E00,001,11490E00,004,52090E00,00 - - 1,23400E-10,001,61040E00,001,45474E10,008,61000E-20,007,85200E-10,001,95100E-10,003,95200E-10,009,70160E00,00
0.0 SBWOdeSolver7,72000E-20,002,71820E00,006,59000E-20,00 - - 1,10000E-30,007,30000E-30,007,67950E00,002,56150E00,007,70000E-30,000,00000E00,001,11490E00,004,52090E00,00 - - 1,23400E-10,001,61040E00,001,45474E10,008,61000E-20,007,85200E-10,001,95100E-10,003,95200E-10,009,70160E00,00
0.0 copasi7,72000E-20,002,71820E00,006,59000E-20,00 - - 1,10000E-30,007,30000E-30,007,67950E00,002,56150E00,007,70000E-30,000,00000E00,001,11490E00,004,52090E00,00 - - 1,23400E-10,001,61040E00,001,45474E10,008,61000E-20,007,85200E-10,001,95100E-10,003,95200E-10,009,70160E00,00
0.0 edu.kgi.roadRunner7,72000E-20,002,71820E00,006,59000E-20,00 - - 1,10000E-30,007,30000E-30,007,67950E00,002,56150E00,007,70000E-30,000,00000E00,001,11490E00,004,52090E00,00 - - 1,23400E-10,001,61040E00,001,45474E10,008,61000E-20,007,85200E-10,001,95100E-10,003,95200E-10,009,70160E00,00
0.2 BioUML7,65071E-20,002,73227E00,006,46291E-20,002,40000E10,001,07709E-30,007,33698E-30,007,90518E00,002,50715E00,007,77191E-30,000,00000E00,001,14955E00,004,46891E00,001,00000E00,001,38951E-10,001,58853E00,001,42197E10,008,61353E-20,007,76322E-10,001,90746E-10,003,87379E-10,009,98660E00,00
0.2 ByoDyn7,65071E-20,002,73227E00,006,46291E-20,002,40000E10,001,07709E-30,007,33698E-30,007,90518E00,002,50715E00,007,77191E-30,000,00000E00,001,14955E00,004,46891E00,001,00000E00,001,38951E-10,001,58853E00,001,42197E10,008,61353E-20,007,76322E-10,001,90746E-10,003,87379E-10,009,98660E00,00
0.2 MathSBML7,65071E-20,002,73227E00,006,46291E-20,00 - - 1,07709E-30,007,33698E-30,007,90518E00,002,50715E00,007,77191E-30,000,00000E00,001,14955E00,004,46891E00,00 - - 1,38951E-10,001,58853E00,001,42197E10,008,61353E-20,007,76322E-10,001,90746E-10,003,87379E-10,009,98660E00,00
0.2 Oscill8 Core7,65071E-20,002,73227E00,006,46291E-20,00 - - 1,07709E-30,007,33698E-30,007,90518E00,002,50715E00,007,77191E-30,000,00000E00,001,14955E00,004,46891E00,00 - - 1,38951E-10,001,58853E00,001,42197E10,008,61353E-20,007,76322E-10,001,90746E-10,003,87379E-10,009,98660E00,00
0.2 SBWOdeSolver7,65071E-20,002,73227E00,006,46291E-20,00 - - 1,07709E-30,007,33698E-30,007,90518E00,002,50715E00,007,77191E-30,000,00000E00,001,14955E00,004,46891E00,00 - - 1,38951E-10,001,58853E00,001,42197E10,008,61353E-20,007,76322E-10,001,90746E-10,003,87379E-10,009,98660E00,00
0.2 copasi7,65071E-20,002,73227E00,006,46291E-20,00 - - 1,07709E-30,007,33698E-30,007,90518E00,002,50715E00,007,77191E-30,000,00000E00,001,14955E00,004,46891E00,00 - - 1,38951E-10,001,58853E00,001,42197E10,008,61353E-20,007,76322E-10,001,90746E-10,003,87379E-10,009,98660E00,00
0.2 edu.kgi.roadRunner7,65071E-20,002,73227E00,006,46291E-20,00 - - 1,07709E-30,007,33698E-30,007,90518E00,002,50715E00,007,77191E-30,000,00000E00,001,14955E00,004,46891E00,00 - - 1,38951E-10,001,58853E00,001,42197E10,008,61353E-20,007,76322E-10,001,90746E-10,003,87379E-10,009,98660E00,00
0.4 BioUML7,57677E-20,002,74441E00,006,33369E-20,002,40000E10,001,05362E-30,007,38606E-30,008,14137E00,002,45308E00,007,82302E-30,000,00000E00,001,18484E00,004,41912E00,001,00000E00,001,56744E-10,001,56689E00,001,38938E10,008,60993E-20,007,67843E-10,001,86564E-10,003,79689E-10,001,02850E10,00
0.4 ByoDyn7,57677E-20,002,74441E00,006,33369E-20,002,40000E10,001,05362E-30,007,38606E-30,008,14137E00,002,45308E00,007,82302E-30,000,00000E00,001,18484E00,004,41912E00,001,00000E00,001,56744E-10,001,56689E00,001,38938E10,008,60993E-20,007,67843E-10,001,86564E-10,003,79689E-10,001,02850E10,00
0.4 MathSBML7,57677E-20,002,74441E00,006,33369E-20,00 - - 1,05362E-30,007,38607E-30,008,14137E00,002,45308E00,007,82302E-30,000,00000E00,001,18484E00,004,41912E00,00 - - 1,56744E-10,001,56689E00,001,38938E10,008,60993E-20,007,67843E-10,001,86564E-10,003,79689E-10,001,02850E10,00
0.4 Oscill8 Core7,57677E-20,002,74441E00,006,33369E-20,00 - - 1,05362E-30,007,38606E-30,008,14137E00,002,45308E00,007,82302E-30,000,00000E00,001,18484E00,004,41912E00,00 - - 1,56744E-10,001,56689E00,001,38938E10,008,60993E-20,007,67843E-10,001,86564E-10,003,79689E-10,001,02850E10,00
0.4 SBWOdeSolver7,57677E-20,002,74441E00,006,33369E-20,00 - - 1,05362E-30,007,38606E-30,008,14137E00,002,45308E00,007,82302E-30,000,00000E00,001,18484E00,004,41912E00,00 - - 1,56744E-10,001,56689E00,001,38938E10,008,60993E-20,007,67843E-10,001,86564E-10,003,79689E-10,001,02850E10,00
0.4 copasi7,57677E-20,002,74441E00,006,33369E-20,00 - - 1,05362E-30,007,38606E-30,008,14137E00,002,45308E00,007,82302E-30,000,00000E00,001,18484E00,004,41912E00,00 - - 1,56744E-10,001,56689E00,001,38938E10,008,60993E-20,007,67843E-10,001,86564E-10,003,79689E-10,001,02850E10,00
0.4 edu.kgi.roadRunner7,57677E-20,002,74441E00,006,33369E-20,00 - - 1,05362E-30,007,38606E-30,008,14137E00,002,45308E00,007,82302E-30,000,00000E00,001,18484E00,004,41912E00,00 - - 1,56744E-10,001,56689E00,001,38938E10,008,60993E-20,007,67843E-10,001,86564E-10,003,79689E-10,001,02850E10,00
0.6 BioUML7,49854E-20,002,75461E00,006,20649E-20,002,40000E10,001,02969E-30,007,43093E-30,008,38818E00,002,39942E00,007,86966E-30,000,00000E00,001,22070E00,004,37171E00,001,00000E00,001,77089E-10,001,54550E00,001,35705E10,008,60064E-20,007,59802E-10,001,82551E-10,003,72104E-10,001,05970E10,00
0.6 ByoDyn7,49854E-20,002,75461E00,006,20649E-20,002,40000E10,001,02969E-30,007,43093E-30,008,38818E00,002,39942E00,007,86966E-30,000,00000E00,001,22070E00,004,37171E00,001,00000E00,001,77089E-10,001,54550E00,001,35705E10,008,60064E-20,007,59802E-10,001,82551E-10,003,72104E-10,001,05970E10,00
0.6 MathSBML7,49854E-20,002,75461E00,006,20649E-20,00 - - 1,02969E-30,007,43093E-30,008,38818E00,002,39942E00,007,86965E-30,000,00000E00,001,22070E00,004,37171E00,00 - - 1,77089E-10,001,54550E00,001,35705E10,008,60064E-20,007,59802E-10,001,82551E-10,003,72104E-10,001,05970E10,00
0.6 Oscill8 Core7,49854E-20,002,75461E00,006,20649E-20,00 - - 1,02969E-30,007,43093E-30,008,38818E00,002,39942E00,007,86966E-30,000,00000E00,001,22070E00,004,37171E00,00 - - 1,77090E-10,001,54550E00,001,35705E10,008,60064E-20,007,59802E-10,001,82551E-10,003,72104E-10,001,05970E10,00
0.6 SBWOdeSolver7,49854E-20,002,75461E00,006,20649E-20,00 - - 1,02969E-30,007,43093E-30,008,38818E00,002,39942E00,007,86966E-30,000,00000E00,001,22070E00,004,37171E00,00 - - 1,77090E-10,001,54550E00,001,35705E10,008,60064E-20,007,59802E-10,001,82551E-10,003,72104E-10,001,05970E10,00
0.6 copasi7,49854E-20,002,75461E00,006,20649E-20,00 - - 1,02969E-30,007,43093E-30,008,38818E00,002,39942E00,007,86966E-30,000,00000E00,001,22070E00,004,37171E00,00 - - 1,77089E-10,001,54550E00,001,35705E10,008,60064E-20,007,59802E-10,001,82551E-10,003,72104E-10,001,05970E10,00
0.6 edu.kgi.roadRunner7,49854E-20,002,75461E00,006,20649E-20,00 - - 1,02969E-30,007,43093E-30,008,38818E00,002,39942E00,007,86966E-30,000,00000E00,001,22070E00,004,37171E00,00 - - 1,77089E-10,001,54550E00,001,35705E10,008,60064E-20,007,59802E-10,001,82551E-10,003,72104E-10,001,05970E10,00
0.8 BioUML7,41639E-20,002,76288E00,006,08149E-20,002,40000E10,001,00544E-30,007,47157E-30,008,64564E00,002,34630E00,007,91184E-30,000,00000E00,001,25702E00,004,32691E00,001,00000E00,002,00329E-10,001,52440E00,001,32503E10,008,58582E-20,007,52237E-10,001,78704E-10,003,64636E-10,001,09225E10,00
0.8 ByoDyn7,41639E-20,002,76288E00,006,08149E-20,002,40000E10,001,00544E-30,007,47157E-30,008,64564E00,002,34630E00,007,91184E-30,000,00000E00,001,25702E00,004,32691E00,001,00000E00,002,00329E-10,001,52440E00,001,32503E10,008,58582E-20,007,52237E-10,001,78704E-10,003,64636E-10,001,09225E10,00
0.8 MathSBML7,41639E-20,002,76288E00,006,08149E-20,00 - - 1,00544E-30,007,47157E-30,008,64564E00,002,34630E00,007,91184E-30,000,00000E00,001,25702E00,004,32691E00,00 - - 2,00329E-10,001,52440E00,001,32503E10,008,58582E-20,007,52237E-10,001,78704E-10,003,64636E-10,001,09225E10,00
0.8 Oscill8 Core7,41639E-20,002,76288E00,006,08149E-20,00 - - 1,00544E-30,007,47157E-30,008,64564E00,002,34630E00,007,91184E-30,000,00000E00,001,25702E00,004,32691E00,00 - - 2,00330E-10,001,52440E00,001,32503E10,008,58582E-20,007,52237E-10,001,78704E-10,003,64636E-10,001,09225E10,00
0.8 SBWOdeSolver7,41639E-20,002,76288E00,006,08149E-20,00 - - 1,00544E-30,007,47157E-30,008,64564E00,002,34630E00,007,91184E-30,000,00000E00,001,25702E00,004,32691E00,00 - - 2,00330E-10,001,52440E00,001,32503E10,008,58582E-20,007,52237E-10,001,78704E-10,003,64636E-10,001,09225E10,00
0.8 copasi7,41639E-20,002,76288E00,006,08149E-20,00 - - 1,00544E-30,007,47157E-30,008,64564E00,002,34630E00,007,91185E-30,000,00000E00,001,25702E00,004,32691E00,00 - - 2,00329E-10,001,52440E00,001,32503E10,008,58582E-20,007,52237E-10,001,78704E-10,003,64636E-10,001,09225E10,00
0.8 edu.kgi.roadRunner7,41639E-20,002,76288E00,006,08149E-20,00 - - 1,00544E-30,007,47157E-30,008,64564E00,002,34630E00,007,91184E-30,000,00000E00,001,25702E00,004,32691E00,00 - - 2,00329E-10,001,52440E00,001,32503E10,008,58582E-20,007,52237E-10,001,78704E-10,003,64636E-10,001,09225E10,00
1.0 BioUML7,33066E-20,002,76923E00,005,95883E-20,002,40000E10,009,80944E-40,007,50802E-30,008,91377E00,002,29380E00,007,94959E-30,000,00000E00,001,29369E00,004,28495E00,001,00000E00,002,26839E-10,001,50361E00,001,29338E10,008,56563E-20,007,45194E-10,001,75019E-10,003,57295E-10,001,12617E10,00
1.0 ByoDyn7,33066E-20,002,76923E00,005,95883E-20,002,40000E10,009,80944E-40,007,50802E-30,008,91377E00,002,29380E00,007,94959E-30,000,00000E00,001,29369E00,004,28495E00,001,00000E00,002,26839E-10,001,50361E00,001,29338E10,008,56563E-20,007,45194E-10,001,75019E-10,003,57295E-10,001,12617E10,00
1.0 MathSBML7,33066E-20,002,76923E00,005,95883E-20,00 - - 9,80944E-40,007,50802E-30,008,91377E00,002,29380E00,007,94959E-30,000,00000E00,001,29369E00,004,28495E00,00 - - 2,26839E-10,001,50361E00,001,29338E10,008,56563E-20,007,45194E-10,001,75019E-10,003,57295E-10,001,12617E10,00
1.0 Oscill8 Core7,33066E-20,002,76923E00,005,95883E-20,00 - - 9,80944E-40,007,50802E-30,008,91377E00,002,29380E00,007,94959E-30,000,00000E00,001,29369E00,004,28495E00,00 - - 2,26839E-10,001,50361E00,001,29338E10,008,56563E-20,007,45194E-10,001,75019E-10,003,57295E-10,001,12617E10,00
1.0 SBWOdeSolver7,33066E-20,002,76923E00,005,95883E-20,00 - - 9,80944E-40,007,50802E-30,008,91377E00,002,29380E00,007,94959E-30,000,00000E00,001,29369E00,004,28495E00,00 - - 2,26839E-10,001,50361E00,001,29338E10,008,56563E-20,007,45194E-10,001,75019E-10,003,57295E-10,001,12617E10,00
1.0 copasi7,33066E-20,002,76923E00,005,95883E-20,00 - - 9,80944E-40,007,50803E-30,008,91377E00,002,29380E00,007,94959E-30,000,00000E00,001,29369E00,004,28495E00,00 - - 2,26839E-10,001,50361E00,001,29338E10,008,56563E-20,007,45194E-10,001,75019E-10,003,57295E-10,001,12617E10,00
1.0 edu.kgi.roadRunner7,33066E-20,002,76923E00,005,95883E-20,00 - - 9,80944E-40,007,50802E-30,008,91377E00,002,29380E00,007,94959E-30,000,00000E00,001,29369E00,004,28495E00,00 - - 2,26839E-10,001,50361E00,001,29338E10,008,56563E-20,007,45194E-10,001,75019E-10,003,57295E-10,001,12617E10,00
1.2 BioUML7,24169E-20,002,77368E00,005,83864E-20,002,40000E10,009,56316E-40,007,54031E-30,009,19251E00,002,24202E00,007,98294E-30,000,00000E00,001,33057E00,004,24612E00,001,00000E00,002,57024E-10,001,48316E00,001,26217E10,008,54024E-20,007,38725E-10,001,71491E-10,003,50089E-10,001,16144E10,00
1.2 ByoDyn7,24169E-20,002,77368E00,005,83864E-20,002,40000E10,009,56316E-40,007,54031E-30,009,19251E00,002,24202E00,007,98294E-30,000,00000E00,001,33057E00,004,24612E00,001,00000E00,002,57024E-10,001,48316E00,001,26217E10,008,54024E-20,007,38725E-10,001,71491E-10,003,50089E-10,001,16144E10,00
1.2 MathSBML7,24169E-20,002,77368E00,005,83864E-20,00 - - 9,56316E-40,007,54031E-30,009,19251E00,002,24202E00,007,98294E-30,000,00000E00,001,33057E00,004,24612E00,00 - - 2,57024E-10,001,48316E00,001,26217E10,008,54024E-20,007,38725E-10,001,71491E-10,003,50089E-10,001,16144E10,00
1.2 Oscill8 Core7,24169E-20,002,77368E00,005,83864E-20,00 - - 9,56316E-40,007,54031E-30,009,19251E00,002,24202E00,007,98294E-30,000,00000E00,001,33057E00,004,24612E00,00 - - 2,57024E-10,001,48316E00,001,26217E10,008,54024E-20,007,38725E-10,001,71491E-10,003,50089E-10,001,16144E10,00
1.2 SBWOdeSolver7,24169E-20,002,77368E00,005,83864E-20,00 - - 9,56316E-40,007,54031E-30,009,19251E00,002,24202E00,007,98294E-30,000,00000E00,001,33057E00,004,24612E00,00 - - 2,57024E-10,001,48316E00,001,26217E10,008,54024E-20,007,38725E-10,001,71491E-10,003,50089E-10,001,16144E10,00
1.2 copasi7,24169E-20,002,77368E00,005,83864E-20,00 - - 9,56316E-40,007,54031E-30,009,19251E00,002,24202E00,007,98294E-30,000,00000E00,001,33057E00,004,24612E00,00 - - 2,57024E-10,001,48316E00,001,26217E10,008,54024E-20,007,38725E-10,001,71491E-10,003,50089E-10,001,16144E10,00
1.2 edu.kgi.roadRunner7,24169E-20,002,77368E00,005,83864E-20,00 - - 9,56316E-40,007,54031E-30,009,19251E00,002,24202E00,007,98294E-30,000,00000E00,001,33057E00,004,24612E00,00 - - 2,57024E-10,001,48316E00,001,26217E10,008,54024E-20,007,38725E-10,001,71491E-10,003,50089E-10,001,16144E10,00
1.4 BioUML7,14982E-20,002,77624E00,005,72104E-20,002,40000E10,009,31637E-40,007,56848E-30,009,48174E00,002,19107E00,008,01195E-30,000,00000E00,001,36747E00,004,21071E00,001,00000E00,002,91319E-10,001,46309E00,001,23146E10,008,50982E-20,007,32887E-10,001,68116E-10,003,43027E-10,001,19806E10,00
1.4 ByoDyn7,14982E-20,002,77624E00,005,72104E-20,002,40000E10,009,31637E-40,007,56848E-30,009,48174E00,002,19107E00,008,01195E-30,000,00000E00,001,36747E00,004,21071E00,001,00000E00,002,91319E-10,001,46309E00,001,23146E10,008,50982E-20,007,32887E-10,001,68116E-10,003,43027E-10,001,19806E10,00
1.4 MathSBML7,14982E-20,002,77624E00,005,72104E-20,00 - - 9,31637E-40,007,56848E-30,009,48174E00,002,19107E00,008,01195E-30,000,00000E00,001,36747E00,004,21071E00,00 - - 2,91319E-10,001,46309E00,001,23146E10,008,50982E-20,007,32887E-10,001,68116E-10,003,43027E-10,001,19806E10,00
1.4 Oscill8 Core7,14982E-20,002,77624E00,005,72104E-20,00 - - 9,31637E-40,007,56848E-30,009,48175E00,002,19107E00,008,01195E-30,000,00000E00,001,36747E00,004,21071E00,00 - - 2,91320E-10,001,46309E00,001,23146E10,008,50982E-20,007,32887E-10,001,68116E-10,003,43027E-10,001,19806E10,00
1.4 SBWOdeSolver7,14982E-20,002,77624E00,005,72104E-20,00 - - 9,31637E-40,007,56848E-30,009,48175E00,002,19107E0</