Test: BIOMD0000000099.xml - Ok

test: BIOMD0000000099.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000099.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4515710981.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: species_2  species_1  species_0  species_5  species_6  species_3  species_4 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation species_2 species_1 species_0 species_5 species_6 species_3 species_4
var error var error var error var error var error var error var error
0.0 BioUML1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 ByoDyn1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 Jarnac1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 MathSBML1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 Oscill8 Core1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 SBToolbox21,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 SBWOdeSolver1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 VCell1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 copasi1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 edu.kgi.roadRunner1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.0 jsim1,00000E00,001,00000E00,000,00000E00,001,50000E00,001,60000E00,002,50000E00,001,40000E00,00
0.2 BioUML1,09928E00,007,10668E-10,001,33768E-10,009,24006E-10,001,47026E00,002,00534E00,001,56368E00,00
0.2 ByoDyn1,09928E00,007,10668E-10,001,33768E-10,009,24006E-10,001,47026E00,002,00534E00,001,56368E00,00
0.2 Jarnac1,09928E00,007,10668E-10,001,33768E-10,009,24006E-10,001,47026E00,002,00534E00,001,56368E00,00
0.2 MathSBML1,09928E00,007,10668E-10,001,33768E-10,009,24006E-10,001,47026E00,002,00534E00,001,56368E00,00
0.2 Oscill8 Core1,09928E00,007,10671E-10,001,33767E-10,009,24023E-10,001,47026E00,002,00535E00,001,56368E00,00
0.2 SBToolbox21,09947E00,007,10568E-10,001,33804E-10,009,22601E-10,151,47045E00,002,00527E00,001,56367E00,00
0.2 SBWOdeSolver1,09928E00,007,10671E-10,001,33767E-10,009,24023E-10,001,47026E00,002,00535E00,001,56368E00,00
0.2 VCell1,09928E00,007,10668E-10,001,33768E-10,009,24006E-10,001,47026E00,002,00534E00,001,56368E00,00
0.2 copasi1,09928E00,007,10668E-10,001,33768E-10,009,24007E-10,001,47026E00,002,00534E00,001,56368E00,00
0.2 edu.kgi.roadRunner1,09928E00,007,10668E-10,001,33768E-10,009,24006E-10,001,47026E00,002,00534E00,001,56368E00,00
0.2 jsim1,09928E00,007,10668E-10,001,33768E-10,009,24006E-10,001,47026E00,002,00534E00,001,56368E00,00
0.4 BioUML1,08602E00,005,69501E-10,002,17192E-10,001,12232E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 ByoDyn1,08602E00,005,69501E-10,002,17192E-10,001,12232E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 Jarnac1,08602E00,005,69501E-10,002,17192E-10,001,12232E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 MathSBML1,08602E00,005,69501E-10,002,17192E-10,001,12232E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 Oscill8 Core1,08602E00,005,69504E-10,002,17191E-10,001,12233E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 SBToolbox21,08628E00,005,69364E-10,002,17248E-10,001,12103E00,111,34310E00,001,72851E00,001,66504E00,00
0.4 SBWOdeSolver1,08602E00,005,69504E-10,002,17190E-10,001,12233E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 VCell1,08602E00,005,69501E-10,002,17192E-10,001,12232E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 copasi1,08602E00,005,69501E-10,002,17192E-10,001,12232E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 edu.kgi.roadRunner1,08602E00,005,69501E-10,002,17192E-10,001,12232E00,001,34304E00,001,72873E00,001,66497E00,00
0.4 jsim1,08602E00,005,69501E-10,002,17192E-10,001,12232E00,001,34304E00,001,72873E00,001,66497E00,00
0.6 BioUML1,03187E00,004,94194E-10,002,68900E-10,001,49565E00,001,27814E00,001,57101E00,001,72484E00,00
0.6 ByoDyn1,03187E00,004,94194E-10,002,68900E-10,001,49565E00,001,27814E00,001,57101E00,001,72484E00,00
0.6 Jarnac1,03187E00,004,94194E-10,002,68900E-10,001,49565E00,001,27814E00,001,57101E00,001,72484E00,00
0.6 MathSBML1,03187E00,004,94194E-10,002,68900E-10,001,49565E00,001,27814E00,001,57101E00,001,72484E00,00
0.6 Oscill8 Core1,03187E00,004,94197E-10,002,68898E-10,001,49565E00,001,27815E00,001,57101E00,001,72484E00,00
0.6 SBToolbox21,03209E00,004,94008E-10,002,69008E-10,001,49434E00,001,27800E00,001,57057E00,001,72506E00,00
0.6 SBWOdeSolver1,03187E00,004,94197E-10,002,68898E-10,001,49565E00,001,27815E00,001,57101E00,001,72484E00,00
0.6 VCell1,03187E00,004,94194E-10,002,68900E-10,001,49565E00,001,27814E00,001,57101E00,001,72484E00,00
0.6 copasi1,03187E00,004,94194E-10,002,68900E-10,001,49565E00,001,27814E00,001,57101E00,001,72484E00,00
0.6 edu.kgi.roadRunner1,03187E00,004,94194E-10,002,68900E-10,001,49565E00,001,27814E00,001,57101E00,001,72484E00,00
0.6 jsim1,03187E00,004,94194E-10,002,68900E-10,001,49565E00,001,27814E00,001,57101E00,001,72484E00,00
0.8 BioUML9,67551E-10,004,52424E-10,003,01032E-10,001,87000E00,001,27678E00,001,46901E00,001,76681E00,00
0.8 ByoDyn9,67551E-10,004,52424E-10,003,01032E-10,001,87000E00,001,27678E00,001,46901E00,001,76681E00,00
0.8 Jarnac9,67551E-10,004,52424E-10,003,01032E-10,001,87000E00,001,27678E00,001,46901E00,001,76681E00,00
0.8 MathSBML9,67551E-10,004,52424E-10,003,01032E-10,001,87000E00,001,27678E00,001,46901E00,001,76681E00,00
0.8 Oscill8 Core9,67551E-10,004,52425E-10,003,01031E-10,001,86999E00,001,27679E00,001,46901E00,001,76681E00,00
0.8 SBToolbox29,67797E-10,004,52244E-10,003,01187E-10,001,86886E00,001,27630E00,001,46845E00,001,76714E00,00
0.8 SBWOdeSolver9,67551E-10,004,52426E-10,003,01031E-10,001,87000E00,001,27679E00,001,46901E00,001,76681E00,00
0.8 VCell9,67551E-10,004,52424E-10,003,01032E-10,001,87000E00,001,27678E00,001,46901E00,001,76681E00,00
0.8 copasi9,67551E-10,004,52424E-10,003,01032E-10,001,87000E00,001,27678E00,001,46901E00,001,76681E00,00
0.8 edu.kgi.roadRunner9,67551E-10,004,52424E-10,003,01032E-10,001,87000E00,001,27678E00,001,46901E00,001,76681E00,00
0.8 jsim9,67551E-10,004,52424E-10,003,01032E-10,001,87000E00,001,27678E00,001,46901E00,001,76681E00,00
1.0 BioUML9,06652E-10,004,30409E-10,003,21956E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 ByoDyn9,06652E-10,004,30409E-10,003,21956E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 Jarnac9,06652E-10,004,30409E-10,003,21956E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 MathSBML9,06652E-10,004,30409E-10,003,21956E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 Oscill8 Core9,06653E-10,004,30411E-10,003,21955E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 SBToolbox29,06835E-10,004,30284E-10,003,22113E-10,002,20888E00,001,32674E00,001,38679E00,001,80887E00,00
1.0 SBWOdeSolver9,06653E-10,004,30411E-10,003,21955E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 VCell9,06652E-10,004,30409E-10,003,21956E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 copasi9,06652E-10,004,30409E-10,003,21956E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 edu.kgi.roadRunner9,06652E-10,004,30409E-10,003,21956E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.0 jsim9,06652E-10,004,30409E-10,003,21956E-10,002,20984E00,001,32745E00,001,38727E00,001,80864E00,00
1.2 BioUML8,55281E-10,004,22152E-10,003,37460E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 ByoDyn8,55281E-10,004,22152E-10,003,37460E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 Jarnac8,55281E-10,004,22152E-10,003,37460E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 MathSBML8,55281E-10,004,22152E-10,003,37460E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 Oscill8 Core8,55283E-10,004,22154E-10,003,37459E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 SBToolbox28,55434E-10,004,22056E-10,003,37644E-10,002,51465E00,001,41736E00,001,30689E00,001,86223E00,00
1.2 SBWOdeSolver8,55283E-10,004,22154E-10,003,37459E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 VCell8,55281E-10,004,22152E-10,003,37460E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 copasi8,55281E-10,004,22152E-10,003,37460E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 edu.kgi.roadRunner8,55281E-10,004,22152E-10,003,37460E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.2 jsim8,55281E-10,004,22152E-10,003,37460E-10,002,51551E00,001,41844E00,001,30739E00,001,86212E00,00
1.4 BioUML8,16267E-10,004,25175E-10,003,51468E-10,002,79403E00,001,54005E00,001,22175E00,001,93433E00,00
1.4 ByoDyn8,16267E-10,004,25175E-10,003,51468E-10,002,79403E00,001,54005E00,001,22175E00,001,93433E00,00
1.4 Jarnac8,16267E-10,004,25175E-10,003,51468E-10,002,79403E00,001,54005E00,001,22175E00,001,93433E00,00
1.4 MathSBML8,16267E-10,004,25175E-10,003,51468E-10,002,79403E00,001,54005E00,001,22175E00,001,93433E00,00
1.4 Oscill8 Core8,16269E-10,004,25177E-10,003,51468E-10,002,79402E00,001,54006E00,001,22175E00,001,93433E00,00
1.4 SBToolbox28,16387E-10,004,25094E-10,003,51639E-10,002,79332E00,001,53858E00,001,22133E00,001,93423E00,00
1.4 SBWOdeSolver8,16269E-10,004,25177E-10,003,51467E-10,002,79403E00,001,54006E00,001,22175E00,001,93433E00,00
1.4 VCell8,16267E-10,004,25175E-10,003,51468E-10,002,79403E00,001,54005E00,001,22175E00,001,93433E00,00
1.4 copasi8,16267E-10,004,25175E-10,003,51468E-10,002,79403E00,001,54005E00,001,22175E00,001,93433E00,00
1.4 edu.kgi.roadRunner8,16267E-10,004,25175E-10,003,51468E-10,002,79403E00,001,54005E00,001,22175E00,001,93433E00,00
1.4 jsim8,16267E-10,004,25175E-10,003,51468E-10,002,79403E00,001,54005E00,001,22175E00,001,93433E00,00
1.6 BioUML7,91049E-10,004,38627E-10,003,66549E-10,003,05097E00,001,68421E00,001,12955E00,002,02894E00,00
1.6 ByoDyn7,91049E-10,004,38627E-10,003,66549E-10,003,05097E00,001,68421E00,001,12955E00,002,02894E00,00
1.6 Jarnac7,91049E-10,004,38627E-10,003,66549E-10,003,05097E00,001,68421E00,001,12955E00,002,02894E00,00
1.6 MathSBML7,91049E-10,004,38627E-10,003,66549E-10,003,05097E00,001,68421E00,001,12955E00,002,02894E00,00
1.6 Oscill8 Core7,91051E-10,004,38628E-10,003,66549E-10,003,05097E00,001,68422E00,001,12955E00,002,02895E00,00
1.6 SBToolbox27,91126E-10,004,38513E-10,003,66670E-10,003,05052E00,001,68248E00,101,12915E00,002,02855E00,00
1.6 SBWOdeSolver7,91051E-10,004,38628E-10,003,66551E-10,003,05096E00,001,68422E00,001,12955E00,002,02895E00,00
1.6 VCell7,91049E-10,004,38627E-10,003,66549E-10,003,05097E00,001,68421E00,001,12955E00,002,02894E00,00
1.6 copasi7,91049E-10,004,38627E-10,003,66549E-10,003,05097E00,001,68421E00,001,12955E00,002,02894E00,00
1.6 edu.kgi.roadRunner7,91049E-10,004,38627E-10,003,66549E-10,003,05097E00,001,68421E00,001,12955E00,002,02894E00,00
1.6 jsim7,91049E-10,004,38627E-10,003,66549E-10,003,05097E00,001,68421E00,001,12955E00,002,02894E00,00
1.8 BioUML7,80509E-10,004,62367E-10,003,84283E-10,003,28804E00,001,84349E00,001,03401E00,002,14706E00,00
1.8 ByoDyn7,80509E-10,004,62367E-10,003,84283E-10,003,28804E00,001,84349E00,001,03401E00,002,14706E00,00
1.8 Jarnac7,80509E-10,004,62367E-10,003,84283E-10,003,28804E00,001,84349E00,001,03401E00,002,14706E00,00
1.8 MathSBML7,80509E-10,004,62367E-10,003,84283E-10,003,28804E00,001,84349E00,001,03401E00,002,14706E00,00
1.8 Oscill8 Core7,80512E-10,004,62369E-10,003,84283E-10,003,28804E00,001,84350E00,001,03401E00,002,14707E00,00
1.8 SBToolbox27,80529E-10,004,62163E-10,003,84327E-10,003,28795E00,001,84152E00,111,03356E00,002,14623E00,00
1.8 SBWOdeSolver7,80512E-10,004,62369E-10,003,84283E-10,003,28804E00,001,84350E00,001,03401E00,002,14707E00,00
1.8 VCell7,80509E-10,004,62367E-10,003,84283E-10,003,28804E00,001,84349E00,001,03401E00,002,14706E00,00
1.8 copasi7,80509E-10,004,62367E-10,003,84283E-10,003,28804E00,001,84349E00,001,03401E00,002,14706E00,00
1.8 edu.kgi.roadRunner7,80509E-10,004,62367E-10,003,84283E-10,003,28804E00,001,84349E00,001,03401E00,002,14706E00,00
1.8 jsim7,80509E-10,004,62367E-10,003,84283E-10,003,28804E00,001,84349E00,001,03401E00,002,14706E00,00
2.0 BioUML7,85306E-10,004,96487E-10,004,05511E-10,003,50239E00,002,01023E00,009,40098E-10,002,28770E00,00
2.0 ByoDyn7,85306E-10,004,96487E-10,004,05511E-10,003,50239E00,002,01023E00,009,40098E-10,002,28770E00,00
2.0 Jarnac7,85306E-10,004,96487E-10,004,05511E-10,003,50239E00,002,01023E00,009,40098E-10,002,28770E00,00
2.0 MathSBML7,85306E-10,004,96487E-10,004,05511E-10,003,50239E00,002,01023E00,009,40098E-10,002,28770E00,00
2.0 Oscill8 Core7,85310E-10,004,96489E-10,004,05512E-10,003,50238E00,002,01023E00,009,40099E-10,002,28770E00,00
2.0 SBToolbox27,85236E-10,004,96148E-10,004,05442E-10,003,50238E00,002,00802E00,119,39850E-10,002,28628E00,00
2.0 SBWOdeSolver7,85310E-10,004,96489E-10,004,05512E-10,003,50238E00,002,01023E00,009,40099E-10,002,28770E00,00
2.0 VCell7,85306E-10,004,96487E-10,004,05511E-10,003,50239E00,002,01023E00,009,40098E-10,002,28770E00,00
2.0 copasi7,85306E-10,004,96487E-10,004,05511E-10,003,50239E00,002,01023E00,009,40098E-10,002,28770E00,00
2.0 edu.kgi.roadRunner7,85306E-10,004,96487E-10,004,05511E-10,003,50239E00,002,01023E00,009,40098E-10,002,28770E00,00
2.0 jsim7,85306E-10,004,96487E-10,004,05511E-10,003,50239E00,002,01023E00,009,40098E-10,002,28770E00,00
2.2 BioUML8,05963E-10,005,41022E-10,004,30503E-10,003,68710E00,002,17584E00,008,52851E-10,002,44794E00,00
2.2 ByoDyn8,05963E-10,005,41022E-10,004,30503E-10,003,68710E00,002,17584E00,008,52851E-10,002,44794E00,00
2.2 Jarnac8,05963E-10,005,41022E-10,004,30503E-10,003,68710E00,002,17584E00,008,52851E-10,002,44794E00,00
2.2 MathSBML8,05963E-10,005,41022E-10,004,30503E-10,003,68710E00,002,17584E00,008,52851E-10,002,44794E00,00
2.2 Oscill8 Core8,05967E-10,005,41024E-10,004,30503E-10,003,68709E00,002,17583E00,008,52853E-10,002,44794E00,00
2.2 SBToolbox28,05740E-10,005,40497E-10,004,30297E-10,003,68695E00,002,17342E00,118,52749E-10,002,44585E00,00
2.2 SBWOdeSolver8,05967E-10,005,41024E-10,004,30503E-10,003,68710E00,002,17583E00,008,52854E-10,002,44794E00,00
2.2 VCell8,05963E-10,005,41022E-10,004,30503E-10,003,68710E00,002,17584E00,008,52851E-10,002,44794E00,00
2.2 copasi8,05963E-10,005,41022E-10,004,30503E-10,003,68710E00,002,17584E00,008,52851E-10,002,44794E00,00
2.2 edu.kgi.roadRunner8,05963E-10,005,41022E-10,004,30503E-10,003,68710E00,002,17584E00,008,52851E-10,002,44794E00,00
2.2 jsim8,05963E-10,005,41022E-10,004,30503E-10,003,68710E00,002,17584E00,008,52851E-10,002,44794E00,00
2.4 BioUML8,42829E-10,005,95747E-10,004,59051E-10,003,83261E00,002,33050E00,007,76237E-10,002,62300E00,00
2.4 ByoDyn8,42829E-10,005,95747E-10,004,59051E-10,003,83261E00,002,33050E00,007,76237E-10,002,62300E00,00
2.4 Jarnac8,42829E-10,005,95747E-10,004,59051E-10,003,83261E00,002,33050E00,007,76237E-10,002,62300E00,00
2.4 MathSBML8,42829E-10,005,95747E-10,004,59051E-10,00