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| Scientific conferences, meetings and ehxibitions |
2010
- BGRS\SB-2010 conference
June 20-27, 1010, Novosibirsk, Russia
- oral presentation: Modular modeling of the apoptosis machinery
Kutumova E.O., Sharipov R.N., Lavrik I.N, Kolpakov F.A.
MS Power Point presentation, 52 slides, 7.8 Mb, English.
- oral presentation: BioUML – integrated platform for building virtual cell
and virtual physiological human
Kolpakov F.A., Tolstyh N.I., Kutumova E.O., Kiselev I.N., Shadrin A.A., Valeev T.F., Ryabova A., Sharipov R.N., Kel A.E.
MS Power Point presentation, 78 slides, 8.4 Mb, English.
- posters about BioUML and its usage for modelling of components of virtual cell and virtual physiological human:
- Microarray data analysis plugin for BioUML
Kiselev I.N., Shadrin A.A., Kolpakov F.A., Kondrakhin Y.V.
poster, pdf,
1 Mb, English.
- Comparison of methods for reconstruction of models for gene expression
regulation
Shadrin A.A., Kiselev I.N., Kolpakov F.A.
MS Power Point presentation, 1 slide, 0.8 Mb, English.
- Web-based genome browser using AJAX and canvas
technologies
Valeev T.F., Tolstyh N.I., Kolpakov F.A.
MS Power Point presentation, 1 slide, 0.5 Mb, English.
- Simulating pulse wave in 1D hemodynamic
model
Leonova T., Kolpakov F.A., Biberdorf E.A.
- Numerical analysis of complex model of human blood flow
circulation using 1D hemodynamic model
Leonova T., Biberdorf E.A., Kolpakov F.A., Blokhin A.M., Markel A.L.
MS Power Point presentation, 1 slide, 0.5 Mb, English.
2008
- The 9th International Conference on Systems Biology (ICSB-2008)
August 22-28, 2008, Gothenburg, Sweden
- Tutorial: New possibilities of BioUML workbench
MS Power Point presentation, 151 slides, 7.3 Mb,
English.
- Poster: BioUML – new concepts and possibilities
Tolstykh N, Lapukhov S., Kiselev I., Shadrin A. and Kolpakov F.
MS Power Point presentation, 1
slide A0, 1.1 Mb, English.
... under construction ...
2003
- International conference of young scientists on mathematical modeling
and informational technologies
November 3-5, 2003, Krasnoyarsk, Russia.
Report: BioUML – software workbench for visual modeling biological
and other complex systems.
Abstract, Russian.
- German Conference on Bioinformatics
October 12-14, 2003, Neuherberg/Garching, Germany.
Poster: Comprehensive model for formalized description, visualization and
simulation of biological systems.
Extended abstract, PDF, 129 kb,
English.
MS Power Point presentation, 1
slide A0, 217 kb, English.
- VIII International Conference "Electronic publicating
El-Pub2003"
October 8-10, 2003, Novosibirsk, Russia.
Report: BioUML - integrated framework for modeling of biological systems
Abstract (English,
Russian)
MS Power Point presentation, 23 slides, 560 kb, Russian.
- European Respiratory Society 13th
annual congress
September 27 – October 1, 2003, Vienna, Austria.
Poster: New
approaches to understanding of heavy metals role in pathogeneses of chronic
respiratory diseases
(about usage of BioUML workbench for formalized description of heavy metals
role in pathogeneses of chronic respiratory diseases)
Poster, PDF, 11 slides, 236 kb,
English.
- Systems
Biology Workshop and Tutorial
September 18, 2003, Tokyo, Japan.
Poster: BioUML - open source extensible Java workbench for systems biology.
MS Power Point presentation, 1 slide, 182 kb, English.
2002
- 3rd Iinternational Conference on Systems Biology (ICSB-2002)
Poster: Biouml - software framework for systems biology.
Abstract, PDF, 50 kb,
English.
- International conference of young scientists on mathematical modeling
and informational technologies
October 29-31, 2002, Novosibirsk, Russia.
Report: Modeling biological systems using BioUML.
MS Power Point presentation
30 slides, 571 kb, Russian.
- "Science in Siberia" section on SibFair-2002 exhibition
October 28-31, 2002, Novosibirsk, Russia.
Presentaion: BioUML - universal language for visual modeling of biological systems.
MS Power Point presentation,
41 slides, 1.11 MB, Russian.
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First Regional Forum
October, 21-24, 2002, Novosibirsk, Russia.
Report: BioUML - integrated extensible framework for modeling
of biological systems.
- VII International Conference "Electronic publicating El-Pub2002"
September 23-27, 2002, Novosibirsk, Russia.
Report: BioUML - integrated framework for modeling of biological systems
MS Power Point presentation,
28 slides, 1.33 MB, Russian.
- BGRS'2002
- Third International Conference on Bioinformatics of
Genome Regulation and Structure.
July 14-20, 2002, Novosibirsk, Russia.
Computer demonstration: "Using BioUML Framework for Systems Biology".
Poster: "BioUML - framework for visual modeling and simulation
of biological systems".
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New Technologies in Medicine.
June 18-19, 2002, Novosibirsk, Russia.
BioUML - Biological Unified Modeling Language.
- On-line conference "Computer applications in chemistry, biology,
pharmaceutics and medicine."
April 17 - June 13, 2002, Moscow, Russia.
BioUML - Biological Unified Modeling Language.
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BioUML tutorial
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October 10, 8.30-12.30 a.m - tutorial
"BioUML - integrated platform for building virtual cell and virtual physiological human"
on ICSB 2010 conference.
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SBML tests passed 100%
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BioUML version 0.9.0 have passed all tests from SBML test suite version 2.0 (SBML L1v2, L2v1-4, L3v1)
Test details.
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Development roadmap was updated
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It outlines of the future releases that the BioUML project hopes to accomplish.
More...
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Demo - flash movies
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We have created 7 flash movies that demonstrate main BioUML features.
Movies
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Have questions?
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If you have any questions please contact us at
info@Biosoft.Ru
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