BioUML - open source Java framework for systems biology

 
 Site Content 
 About 
    Home 
    Development roadmap 
    Team 
    Acknowledgements 
    Contact us 
    Philosophical notes 
 
 
 Software 
    BioUML workbench 
    BioUML development kit 
    Help & manuals 
    Tests 
 
 
 News, Events, Publications 
    News 
    Forum 
    Conferences 
    Publications 
 
 
 
     
  Downloads

BioUML workbench 0.7.1 (beta)

Release notes.

installer for Windows OS (5.8 Mb)
installer for Linux/Unix OS (5.7 Mb)

By request we will prepare installer for Mac OS. You can post the request to BioUML forum.


Modules for BioUML workbench 0.7.1

SBML model repository (52 kb). See the module description for more details.

Warning: modules of BioUML workbench version 0.5 are not suitable for version 0.7.
If you need to convert your data from version 0.5 to version 0.7 please contact at info@biosoft.ru.


BioUML development kit

BDK (5.1 mb).

BioUML Development Kit (BDK) allows to developer implement their own modules for BioUML as well as modify and improve BioUML workbench.

BioUML development kit includes:

  • BioUML workbench sources (biouml package)
    They are available under GNU LGPL license.
    (c) Copyright Biosoft.Ru 2002, 2003. All rights reserved.
     
  • Java libraries from Biosoft.Ru.
    These libraries (ru.biosoft package) are essential part of BioUML Development Kit.
    They are available under GNU LGPL license.
    (c) Copyright Biosoft.Ru 2002, 2003. All rights reserved.
    http://www.biosoft.ru
     
  • Java libraries from (package com.developmentontheedge)
    These library are used for BioUML framework UI.
    Copyright © 2001-2003 DevelopmentOnTheEdge.com. All Rights Reserved.
    http://www.developmentontheedge.com
     
  • BeanExplorer(TM)
    New methodology for rapid development of application user interface.
    Copyright © 2001, 2002 DevelopmentOnTheEdge.com. All Rights Reserved.
    http://www.BeanExplorer.com.
     
  • Eclipse platform runtime
    (c) Copyright IBM Corp. and others 2000, 2002. All rights reserved.
    http://www.eclipse.org
     
  • Java libraries from Jakarta project (LOG4J, ORO, XERCES)
    Copyright © 1999-2003 The Apache Software Foundation. All Rights Reserved.
    http://www.apache.org

  •  
  • Systems Biology Workbench
    Copyright 2001-2003 California Institute of Technology and Japan Science and Technology Corporation.
    http://www.sbw-sbml.org

  • Rhino: JavaScript for Java
    Copyright © 1998-2003 The Mozilla Organization.
    http://www.mozilla.org
     

  • build.xml - makefile for Ant to compile and run BioUML workbench or it parts.

Other modules can include additional software developed by third parties.

     
BioUML tutorial
October 10, 8.30-12.30 a.m - tutorial "BioUML - integrated platform for building virtual cell and virtual physiological human" on ICSB 2010 conference.
 
Development roadmap was updated
It outlines of the future releases that the BioUML project hopes to accomplish. More...
 
SBML tests passed 100%
BioUML version 0.9.0 have passed all tests from SBML test suite version 2.0 (SBML L1v2, L2v1-4, L3v1) Test details.
 
Demo - flash movies
We have created 7 flash movies that demonstrate main BioUML features. Movies
 
BioUML forum
The forum aims to co-ordinate a community effort towards of development of BioUML and its application for modelling of biological systems. Here you can ask your questions as well as post your comments and suggestions. More...
 


Copyright © 2001-2008 Institute of Systems Biology. All rights reserved.