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BioUML workbench 0.7.4 (alpha)
Release notes.
installer
for Windows OS (7.4 Mb)
installer
for Linux/Unix OS (7.4 Mb)
By request we will prepare installer for Mac OS. You can post the request to
BioUML forum.
Modules for BioUML workbench 0.7.4
Warning: modules for old versions of BioUML workbench are not suitable for
new version 0.7.4
SBML model repository (61 kb). See the
module description for more details.
CellML models (764
kb).
This is subset of CellML
models that includes description of chemical reactions.
GeneNet database
module (1.2 mb)
This is version of GeneNet
database when it was available for download (June 2004).
...
BioUML development kit
BDK (7.4 mb).
BioUML Development Kit (BDK) allows to developer implement their own modules for
BioUML as well as modify and improve BioUML workbench.
BioUML development kit includes:
- BioUML workbench sources (biouml package)
They are available under GNU LGPL license.
(c) Copyright Biosoft.Ru 2002, 2003. All rights reserved.
- Java libraries from Biosoft.Ru.
These libraries (ru.biosoft package) are essential part of BioUML Development
Kit.
They are available under GNU LGPL license.
(c) Copyright Biosoft.Ru 2002, 2003. All rights reserved.
http://www.biosoft.ru
- Java libraries from (package com.developmentontheedge)
These library are used for BioUML framework UI.
Copyright © 2001-2003 DevelopmentOnTheEdge.com. All Rights Reserved.
http://www.developmentontheedge.com
- BeanExplorer(TM)
New methodology for rapid development of application
user interface.
Copyright © 2001, 2002 DevelopmentOnTheEdge.com. All Rights Reserved.
http://www.BeanExplorer.com.
- Eclipse platform runtime
(c) Copyright IBM Corp. and others 2000, 2002. All rights reserved.
http://www.eclipse.org
- Java libraries from Jakarta project (LOG4J, ORO, XERCES)
Copyright © 1999-2003 The Apache Software Foundation. All Rights Reserved.
http://www.apache.org
- Systems Biology Workbench
Copyright 2001-2003 California Institute of Technology and Japan Science and
Technology Corporation.
http://www.sbw-sbml.org
- Rhino: JavaScript for Java
Copyright © 1998-2003 The Mozilla Organization.
http://www.mozilla.org
- build.xml - makefile for Ant to compile and run BioUML
workbench or it
parts.
Other modules can include additional software developed by third parties.
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BioUML tutorial
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October 10, 8.30-12.30 a.m - tutorial
"BioUML - integrated platform for building virtual cell and virtual physiological human"
on ICSB 2010 conference.
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Development roadmap was updated
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It outlines of the future releases that the BioUML project hopes to accomplish.
More...
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SBML tests passed 100%
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BioUML version 0.9.0 have passed all tests from SBML test suite version 2.0 (SBML L1v2, L2v1-4, L3v1)
Test details.
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Demo - flash movies
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We have created 7 flash movies that demonstrate main BioUML features.
Movies
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BioUML forum
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The forum aims to co-ordinate a community effort towards
of development of BioUML and its application for modelling
of biological systems. Here you can ask your questions as well as
post your comments and suggestions.
More...
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