News

2008

• August 28 - BioUML workbench version 0.8.3 (alpha) was released.
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• August 28 - BioUML development roadmap was updated.
   
• August 23, 9-11 a.m - tutorial "New possibilities of BioUML workbench" on ICSB conference.
   
• August 9 - BioUML workbench version 0.8.2 (alpha) was released.
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• July 22 - BioUML workbench version 0.8.1 (alpha) was released.
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• July 2 - BioUML workbench version 0.8.0 (beta) and BDK 0.8.0 were released.
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• May 29 - flash movies
  We have created 7 flash movies that demonstrate main BioUML features.
  Movies
   
• March 29 - Simulation results from ByoDyn were included into simulator comparisons. 
  Our congratulations to ByoDyn team with the excellent results!
  It is interesting that it changed BioUML results. Previously only BioUMl have generated values for some parameters in several tests and we believed these tests to be passed successfully. Now results from ByoDyn are available for these parameters and they are differ from values produced by BioUML - so such tests now are considered for BioUML as failed (significant difference). Previously BioUML passed 142 tests without difference, now only 136.
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• March 20 - Simulation results from Virtual Cell were included into simulator comparisons.
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• March 20 - BioUML workbench version 0.7.8 (beta) was released.
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• March 18 - BioUML workbench version 0.7.8 (beta) was able to simulate all 150 SBML models from BioModlels database (release 9).
  According to our metrics now BioUML is the best simulator for SBML models.
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• January 30 - updated version of BioUML workbench and BDK 0.7.8 were released
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• January 30 - a set of materials for virtual participation in SBGN were updated
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• January 28 - a set of materials for virtual participation in SBGN super-hackathon was published on the web site.
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• January 28 - BioUML workbench version 0.7.8 (alpha) was released.
  This is alpha version for SBGN super-hackathon
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• January  27 - BioUML development roadmap was updated.
  

2007

• October 29 - minor BioUML Development Kit (BDK) update (version 0.7.7 download page)
  Hopefully now BDK can be compiled by 3-rd party developers without problems.
   
• October 29 - minor web site update
  added: news, user manual
  updated: menu, comments, team
   
• October 28 - draft versionf of user manual for BioUML workbench is available.
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• October 24 - BioUML workbench version 0.7.7 was released.
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• October 6 - Embedding formal graphic notations into SBML models (560 kb)
  The Twelfth Workshop on Software Platforms for Systems Biology,
  Hyatt Regency Hotel, Long Beach, California, USA
   
• October 5 - Formal description and visual modeling of complex biological systems using BioUML workbench and BioUML Network Edition" (1.4 Mb)
  The Twelfth Workshop on Software Platforms for Systems Biology,
  Hyatt Regency Hotel, Long Beach, California, USA
   
• October 1 - tutorial on ICSB 2007:
  Formal description and visual modeling of complex biological systems using BioUML workbench and BioUML Network Edition.