Summary

Tests Successfull Failed Errors Needs tuning CSV error Result differs Success rate Time (s)
141 120 0 0 0 21 0 100.0 % 1598

Legend:
Failed - an exception has occured.
Errors - simulation results significantly differ from the known ones.
Needs tuning - relative error is not small enough.
CSV error - original CSV data is missing or can not be parsed.
Result differs - some variable or time point is missing in simulation engine output..


Name Tests (s) Successfull Failed Errors Needs tuning CSV error Result differs Time (s)
BasicReactions 19 19 0 0 0 0 0 9
ParameterNamespace 4 4 0 0 0 0 0 2
ComplexReactions 6 6 0 0 0 0 0 475
MathML 43 43 0 0 0 0 0 27
BasicRules 16 16 0 0 0 0 0 4
Stoichiometry 2 2 0 0 0 0 0 0
Discontinuity,TimeAndDelays 15 14 0 0 0 1 0 10
AlgebraicRules 2 2 0 0 0 0 0 502
Functions 6 5 0 0 0 1 0 504
Events 5 4 0 0 0 1 0 10
Compartments 3 3 0 0 0 0 0 33
rulesForParametersAndCompartments 20 2 0 0 0 18 0 17

Category BasicReactions

Name Status Description Time (s)
basic-reactions/model1/BothBoundary/basic-model1-bothboundary ok Warnning: Model is completely static: no parameter is changed.
Warnning: Variable 'S1' is not contained in simulation result: will be substituted with initial value
Warnning: Variable 'S2' is not contained in simulation result: will be substituted with initial value		 0.0
basic-reactions/model1/Boundary/basic-model1-boundary ok Warnning: Variable 'S1' is not contained in simulation result: will be substituted with initial value 0.812
basic-reactions/model1/Boundary2/basic-model1-boundary2 ok Warnning: Variable 'S2' is not contained in simulation result: will be substituted with initial value 0.516
basic-reactions/model1/NoEffect/basic-model1-noeffect ok   0.344
basic-reactions/model1/StoichiometryIs2/basic-model1-stoichiometryIs2 ok   0.485
basic-reactions/model1/forward-from-zero/basic-model1-forward-from-zero ok   0.516
basic-reactions/model1/forward/basic-model1-forward ok   0.5
basic-reactions/model2/base/basic-model2-base ok   0.453
basic-reactions/model2/boundaryA/basic-model2-boundaryA ok Warnning: Variable 'A' is not contained in simulation result: will be substituted with initial value 0.469
basic-reactions/model2/boundaryAB/basic-model2-boundaryAB ok Warnning: Variable 'A' is not contained in simulation result: will be substituted with initial value 0.422
basic-reactions/model2/boundaryABC/basic-model2-boundaryABC ok Warnning: Model is completely static: no parameter is changed. 0.422
basic-reactions/model2/boundaryC/basic-model2-boundaryC ok Warnning: Variable 'C' is not contained in simulation result: will be substituted with initial value 0.438
basic-reactions/model2/stoichiometryA2/basic-model2-stoichiometryA2 ok   0.5
basic-reactions/model3/base/basic-model3-base ok   0.515
basic-reactions/model3/stoichiometry2S4/basic-model3-stoichiometry2S4 ok   0.547
basic-reactions/model3/boundaryS4/basic-model3-boundaryS4 ok Warnning: Variable 'S4' is not contained in simulation result: will be substituted with initial value 0.516
basic-reactions/model4/base/basic-model4-base ok   0.5
basic-reactions/model5/base/basic-model5-base ok   0.781
basic-reactions/model6/base/basic-model6-base ok   0.594

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Category ParameterNamespace

Name Status Description Time (s)
parameterNamespace/global/parameterNamespace-global ok   0.593
parameterNamespace/globalAndLocal/parameterNamespace-globalAndLocal ok   0.906
parameterNamespace/local/parameterNamespace-local ok   0.547
parameterNamespace/speciesAndLocal/parameterNamespace-speciesAndLocal ok   0.828

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Category ComplexReactions

Name Status Description Time (s)
complexReactions/FeedbackCompetitive/feedbackCompetitive ok Warnning: Variable 'X0' is not contained in simulation result: will be substituted with initial value 12.891
complexReactions/Hill/Hill ok   1.375
complexReactions/ModifierNegativeFeedback/complexReactions-ModifierNegativeFeedback ok   0.828
complexReactions/NoProduct/complex-NoProduct ok   0.562
complexReactions/NoReactant/complex-NoReactant ok   0.375
complexReactions/linearNegFeedback/complex-linearnegfeedback ok   459.188

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Category MathML

Name Status Description Time (s)
mathml/abs/mathml-abs ok   7.187
mathml/arccos/mathml-arccos ok   0.407
mathml/arccosh/mathml-arccosh ok   0.469
mathml/arccot/mathml-arccot ok   0.547
mathml/arccoth/mathml-arccoth ok   0.391
mathml/arccsc/mathml-arccsc ok   0.406
mathml/arccsch/mathml-arccsch ok   0.484
mathml/arcsec/mathml-arcsec ok   0.453
mathml/arcsech/mathml-arcsech ok   0.422
mathml/arcsin/mathml-arcsin ok   0.625
mathml/arcsinh/mathml-arcsinh ok   0.547
mathml/arctan/mathml-arctan ok   0.547
mathml/arctanh/mathml-arctanh ok   0.468
mathml/cn-e-notation/mathml-cn-e-notation ok   0.453
mathml/cn-integer/mathml-cn-integer ok   0.578
mathml/cn-rational/mathml-cn-rational ok   0.453
mathml/cn-real/mathml-cn-real ok   0.484
mathml/cos/mathml-cos ok   0.421
mathml/cosh/mathml-cosh ok   0.391
mathml/cot/mathml-cot ok   0.469
mathml/coth/mathml-coth ok   0.437
mathml/csc/mathml-csc ok   0.438
mathml/csch/mathml-csch ok   0.453
mathml/divide/mathml-divide ok   0.484
mathml/exp/mathml-exp ok   0.437
mathml/exponentiale/mathml-exponentiale ok   0.453
mathml/ln/mathml-ln ok   0.469
mathml/log/mathml-log ok   0.469
mathml/logbase/mathml-logbase ok   0.515
mathml/minus-unary/mathml-minus-unary ok   0.454
mathml/minus/mathml-minus ok   0.5
mathml/pi/mathml-pi ok   0.453
mathml/plus/mathml-plus ok   0.375
mathml/power/mathml-power ok   0.453
mathml/root-degree/mathml-root-degree ok   0.875
mathml/root/mathml-root ok   0.422
mathml/sec/mathml-sec ok   0.438
mathml/sech/mathml-sech ok   0.422
mathml/sin/mathml-sin ok   0.453
mathml/sinh/mathml-sinh ok   0.469
mathml/tan/mathml-tan ok   0.485
mathml/tanh/mathml-tanh ok   0.453
mathml/times/mathml-times ok   0.562

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Category BasicRules

Name Status Description Time (s)
basicRules/assignment-Species/basicRules-assignment-Species ok   0.047
basicRules/assignmentInconsistent-Species/basicRules-assignmentInconsistent-Species ok   0.031
basicRules/assignmentInitialize-Species/basicRules-assignmentInitialize-Species ok   0.032
basicRules/assignmentUsedInAssignment-Species/basicRules-assignmentUsedInAssignment-Species ok   0.031
basicRules/assignmentUsedInDifferential-Species/basicRules-assignmentUsedInDifferential-Species ok   0.422
basicRules/assignmentUsedInReaction-Species/basicRules-assignmentUsedInReaction-Species ok   0.36
basicRules/differential-Species/basicRules-differential-Species ok   0.359
basicRules/differentialUsedInDifferential-Species/basicRules-differentialUsedInDifferential-Species ok   0.343
basicRules/differentialUsedInReaction-Species/basicRules-differentialUsedInReaction-Species ok   0.375
basicRules/dynamicAssignmentUsedInDifferential-Species/basicRules-dynamicAssignmentUsedInDifferential-Species ok   0.391
basicRules/dynamicAssignmentUsedInReaction-Species/basicRules-dynamicAssignmentUsedInReaction-Species ok   0.36
basicRules/noRule-Species/basicRules-noRule-Species ok Warnning: Model is completely static: no parameter is changed. 0.36
basicRules/reactionUsedInDifferential-Species/basicRules-reactionUsedInDifferential-Species ok   0.422
basicRules/differentialUsedInAssignment-Species/basicRules-differentialUsedInAssignment-Species ok   0.344
basicRules/differentialUsedInAssignmentConsistent-Species/basicRules-differentialUsedInAssignmentConsistent-Species ok   0.343
basicRules/reactionUsedInAssignment-Species/basicRules-reactionUsedInAssignment-Species ok   0.391

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Category Stoichiometry

Name Status Description Time (s)
stoichiometry/floatingPoint/stoichiometry-floatingPoint ok   0.375
stoichiometry/mathML/stoichiometry-mathML ok   0.453

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Category Discontinuity,TimeAndDelays

Name Status Description Time (s)
discontinuityTimeAndDelays/and/discontinuityTimeAndDelay-and ok   0.454
discontinuityTimeAndDelays/ceiling/discontinuityTimeAndDelays-ceiling ok   0.438
discontinuityTimeAndDelays/discontinuity/discontinuityTimeAndDelay-discontinuity ok   0.438
discontinuityTimeAndDelays/factorial/discontinuityTimeAndDelays-factorial ok   0.485
discontinuityTimeAndDelays/false/discontinuityTimeAndDelay-false ok   0.36
discontinuityTimeAndDelays/floor/discontinuityTimeAndDelays-floor ok   0.562
discontinuityTimeAndDelays/geq/discontinuityTimeAndDelay-geq ok   0.453
discontinuityTimeAndDelays/leq/discontinuityTimeAndDelay-leq ok   0.437
discontinuityTimeAndDelays/lt/discontinuityTimeAndDelay-lt ok   0.438
discontinuityTimeAndDelays/not/discontinuityTimeAndDelay-not ok   0.437
discontinuityTimeAndDelays/or/discontinuityTimeAndDelay-or ok   0.469
discontinuityTimeAndDelays/time/discontinuityTimeAndDelays-time ok   0.406
discontinuityTimeAndDelays/true/discontinuityTimeAndDelay-true ok   0.422
discontinuityTimeAndDelays/xor/discontinuityTimeAndDelay-xor ok   0.609
discontinuityTimeAndDelays/delay/discontinuityTimeAndDelay-delay CSV error Error: CSV file absents, test=discontinuityTimeAndDelays/delay/discontinuityTimeAndDelay-delay, file=discontinuityTimeAndDelay-delay.CSV 3.734

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Category AlgebraicRules

Name Status Description Time (s)
algebraicRules/basic/algebraicRules-basic ok Warnning: Variable 'z' is not contained in simulation result: will be substituted with initial value 12.422
algebraicRules/fastReactionExample/algebraicRules-fastReactionExample ok   490.125

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Category Functions

Name Status Description Time (s)
functions/algebraic-rule/functions-algebraic-rule ok   501.5
functions/basic-rules/functions-basic-rules ok   0.375
functions/event-assignment/functions-event-assignment ok   0.641
functions/kinetic-law/functions-kinetic-law ok   0.407
functions/function/functions-function ok   0.375
functions/stoichiometry/functions-stoichiometry CSV error Error: CSV file absents, test=functions/stoichiometry/functions-stoichiometry, file=functions-stoichiometry.CSV 0.735

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Category Events

Name Status Description Time (s)
events/1-event-1-assignment/events-1-event-1-assignment ok   0.75
events/1-event-2-assignments/events-1-event-2-assignments ok   1.046
events/2-events-1-assignment/events-2-events-1-assignment ok   2.766
events/increment/events-increment ok   4.234
events/complex-trigger/events-complex-trigger CSV error Error: CSV file absents, test=events/complex-trigger/events-complex-trigger, file=events-complex-trigger.CSV 1.25

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Category Compartments

Name Status Description Time (s)
compartments/nonUnitVolume-initialAmount/compartments-nonUnitVolume-initialAmount ok   15.547
compartments/nonUnitVolume-initialConcentration/compartments-nonUnitVolume-initialConcentration ok   16.578
compartments/transportReaction/compartments-transportReaction ok   1.094

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Category rulesForParametersAndCompartments

Name Status Description Time (s)
rulesForParametersAndCompartments/assignment-Compartment/rulesForParametersAndCompartments-assignment-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignment-Compartment/rulesForParametersAndCompartments-assignment-Compartment, file=rulesForParametersAndCompartments-assignment-Compartment.CSV 0.031
rulesForParametersAndCompartments/assignment-Parameter/rulesForParametersAndCompartments-assignment-Parameter CSV error Error: Bad line: 0,"{s[0.]} /. NDSolve[{}, {}, {0., 0., 5.}, AccuracyGoal -> 30., PrecisionGoal -> 12.]" 0.032
rulesForParametersAndCompartments/assignmentInconsistent-Compartment/rulesForParametersAndCompartments-assignmentInconsistent-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignmentInconsistent-Compartment/rulesForParametersAndCompartments-assignmentInconsistent-Compartment, file=rulesForParametersAndCompartments-assignmentInconsistent-Compartment.CSV 0.031
rulesForParametersAndCompartments/assignmentInconsistent-Parameter/rulesForParametersAndCompartments-assignmentInconsistent-Parameter CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignmentInconsistent-Parameter/rulesForParametersAndCompartments-assignmentInconsistent-Parameter, file=rulesForParametersAndCompartments-assignmentInconsistent-Parameter.CSV 0.031
rulesForParametersAndCompartments/assignmentInitialize-Compartment/rulesForParametersAndCompartments-assignmentInitialize-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignmentInitialize-Compartment/rulesForParametersAndCompartments-assignmentInitialize-Compartment, file=rulesForParametersAndCompartments-assignmentInitialize-Compartment.CSV 0.015
rulesForParametersAndCompartments/assignmentInitialize-Parameter/rulesForParametersAndCompartments-assignmentInitialize-Parameter CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignmentInitialize-Parameter/rulesForParametersAndCompartments-assignmentInitialize-Parameter, file=rulesForParametersAndCompartments-assignmentInitialize-Parameter.CSV 0.031
rulesForParametersAndCompartments/assignmentUsedInDifferential-Compartment/rulesForParametersAndCompartments-assignmentUsedInDifferential-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignmentUsedInDifferential-Compartment/rulesForParametersAndCompartments-assignmentUsedInDifferential-Compartment, file=rulesForParametersAndCompartments-assignmentUsedInDifferential-Compartment.CSV 0.391
rulesForParametersAndCompartments/assignmentUsedInDifferential-Parameter/rulesForParametersAndCompartments-assignmentUsedInDifferential-Parameter CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignmentUsedInDifferential-Parameter/rulesForParametersAndCompartments-assignmentUsedInDifferential-Parameter, file=rulesForParametersAndCompartments-assignmentUsedInDifferential-Parameter.CSV 0.359
rulesForParametersAndCompartments/assignmentUsedInReaction-Compartment/rulesForParametersAndCompartments-assignmentUsedInReaction-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignmentUsedInReaction-Compartment/rulesForParametersAndCompartments-assignmentUsedInReaction-Compartment, file=rulesForParametersAndCompartments-assignmentUsedInReaction-Compartment.CSV 0.422
rulesForParametersAndCompartments/assignmentUsedInReaction-Parameter/rulesForParametersAndCompartments-assignmentUsedInReaction-Parameter CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/assignmentUsedInReaction-Parameter/rulesForParametersAndCompartments-assignmentUsedInReaction-Parameter, file=rulesForParametersAndCompartments-assignmentUsedInReaction-Parameter.CSV 0.391
rulesForParametersAndCompartments/differential-Compartment/rulesForParametersAndCompartments-differential-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/differential-Compartment/rulesForParametersAndCompartments-differential-Compartment, file=rulesForParametersAndCompartments-differential-Compartment.CSV 0.406
rulesForParametersAndCompartments/differential-Parameter/rulesForParametersAndCompartments-differential-Parameter CSV error Error: CSV file processing error:java.lang.NumberFormatException: For input string: "sout[0.]" 0.422
rulesForParametersAndCompartments/differentialUsedInDifferential-Compartment/rulesForParametersAndCompartments-differentialUsedInDifferential-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/differentialUsedInDifferential-Compartment/rulesForParametersAndCompartments-differentialUsedInDifferential-Compartment, file=rulesForParametersAndCompartments-differentialUsedInDifferential-Compartment.CSV 0.422
rulesForParametersAndCompartments/differentialUsedInDifferential-Parameter/rulesForParametersAndCompartments-differentialUsedInDifferential-Parameter ok   0.453
rulesForParametersAndCompartments/differentialUsedInReaction-Compartment/rulesForParametersAndCompartments-differentialUsedInReaction-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/differentialUsedInReaction-Compartment/rulesForParametersAndCompartments-differentialUsedInReaction-Compartment, file=rulesForParametersAndCompartments-differentialUsedInReaction-Compartment.CSV 0.375
rulesForParametersAndCompartments/differentialUsedInReaction-Parameter/rulesForParametersAndCompartments-differentialUsedInReaction-Parameter ok Warnning: Variable 's1' is not contained in simulation result: will be substituted with initial value 0.484
rulesForParametersAndCompartments/reactionUsedInAssignment-Compartment/rulesForParametersAndCompartments-reactionUsedInAssignment-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/reactionUsedInAssignment-Compartment/rulesForParametersAndCompartments-reactionUsedInAssignment-Compartment, file=rulesForParametersAndCompartments-reactionUsedInAssignment-Compartment.CSV 1.281
rulesForParametersAndCompartments/reactionUsedInAssignment-Parameter/rulesForParametersAndCompartments-reactionUsedInAssignment-Parameter CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/reactionUsedInAssignment-Parameter/rulesForParametersAndCompartments-reactionUsedInAssignment-Parameter, file=rulesForParametersAndCompartments-reactionUsedInAssignment-Parameter.CSV 1.266
rulesForParametersAndCompartments/reactionUsedInDifferential-Compartment/rulesForParametersAndCompartments-reactionUsedInDifferential-Compartment CSV error Error: CSV file absents, test=rulesForParametersAndCompartments/reactionUsedInDifferential-Compartment/rulesForParametersAndCompartments-reactionUsedInDifferential-Compartment, file=rulesForParametersAndCompartments-reactionUsedInDifferential-Compartment.CSV 6.047
rulesForParametersAndCompartments/reactionUsedInDifferential-Parameter/rulesForParametersAndCompartments-reactionUsedInDifferential-Parameter CSV error Error: CSV file processing error:java.lang.NumberFormatException: For input string: "s2[0.]" 5.109

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