The SBML Test Suite is a conformance testing system for SBML. It allows developers and users to test the degree and correctness of SBML support provided in an SBML-compatible software package.
More details you can find at:
http://sbml.org/Software/SBML_Test_Suite
SBML test suite was used to validate BioUML simulation engines.
| SBML test suite | version 2.0.0 beta 1 | 2010, April 2 | |||
| BioUML simulation engine | version 0.9.0 alpha | 2010, July 1 |
You can start any test via BioUML web edition:
Test results are summarized below
| SBML | Details | Tests | Successful | Failed | Errors | Needs tuning | CSV error | Result differs | Problem is stiff | Compilation error | Success rate | Time (s) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Level 1 version 2* |
by order by categories | 234 | 234 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 100.0 % | 18 |
| Level 2 version 1 | by order by categories |
927 | 788 | 0 | 0 | 0 | 139** | 0 | 0 | 0 | 100.0 % | 94 |
| Level 2 version 2 | by order by categories |
927 | 927 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 100.0 % | 211 |
| Level 2 version 3 | by order by categories |
927 | 927 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 100.0 % | 343 |
| Level 2 version 4 | by order by categories |
927 | 927 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 100.0 % | 467 |
| Level 3 version 1 | by order by categories |
927 | 927 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 100.0 % | 104 |
Legend
Failed - an exception has occurred.
Errors - simulation results significantly differ from the known ones.
Needs tuning - relative error is not small enough.
CSV error - original CSV data is missing or can not be parsed.
Result differs - some variable or time point is missing in simulation engine
output..
Problem is stiff - Problem is too stiff for this solver.
Compilation error - Could not compile generated model file.
Notes
* in tests 182, 573, 576 - algebraic rule changed to equivalent parameterRule with type = "scalar".
See discussion
on SBM forum for more details.
** here it means that 139 tests are missing (some information about model can
not be stored) for SBML level 2 version 1.